BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939607

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02280.1 | Symbols:  | SNARE-like superfamily protein | chr5...   776    0.0  


> AT5G02280.1 | Symbols:  | SNARE-like superfamily protein | chr5:469298-470285 
FORWARD LENGTH=661
Length=661

 Score =  776 bits (420),  Expect = 0.0
 Identities = 454/470 (97%), Gaps = 3/470 (1%)
 Strand=Plus/Plus

Query  1    TTGAAGATTATC---GGAAAACAATGGCGGCGATTTACAGTCTTTACATAATAAACAAAT  57
            ||||||||||||   |||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct  57   TTGAAGATTATCGGGGGAAAAAAATGGCAGCGATTTACAGTCTTTACATAATTAACAAAT  116

Query  58   CTGGTGGTTTGATATTCTACAAGGATTGTGGAACAAAGGGAAGAATGGATACAAATGATA  117
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  117  CTGGTGGTTTGATATTCTACAAGGATTGTGGAACAAAGGGAAGAATGGATACGAATGATA  176

Query  118  GCTTGAGAGTAGCTAGTTTATGGCATTCAATGCACGCCATTTCTCAGCAGCTTTCACCTG  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  GCTTGAGAGTAGCTAGTTTATGGCATTCAATGCACGCCATTTCTCAGCAGCTTTCACCTG  236

Query  178  TCAATGGCTGTTCTGGAATTGAGCTTCTCGAAGCCGACACTTTTGATCTCCATTGTTTCC  237
            |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct  237  TCAATGGCTGTTCTGGCATCGAGCTTCTCGAAGCCGACACTTTCGATCTCCATTGTTTCC  296

Query  238  AATCTCTCCCAGGAACAAAGTTCTTTGTGGTTTGTGAACCTGGGACTCCTCACATGGAGA  297
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGTCTCTCCCAGGAACAAAGTTCTTTGTGGTTTGTGAACCTGGGACTCCTCACATGGAGA  356

Query  298  GCCTCCTTAGATACATTTATGAACTCTACACTGATTATGTCTTGAAGAATCCTTTCTACG  357
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  357  GCCTCCTTAGATACATTTATGAACTCTACACTGATTACGTCTTGAAGAATCCTTTCTATG  416

Query  358  AGATTGAAATGCCTATCCGTTGCGAGCTTTTCGACATCAACCTTACTCAAGCTGTACAGT  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  AGATTGAAATGCCTATCCGTTGCGAGCTTTTCGACATCAACCTTACTCAAGCTGTACAGT  476

Query  418  CAGATCGTGTTGCATTGTTAGGACGATGAGCAAGAGATTGATTCTCTGCT  467
            ||||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct  477  CAGATCGTGTTGCTTTGTTAGGACGATGAACTAGAGATTGATTCTCTGCT  526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22203492974


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5