BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939714
Length=2473
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03340.1 | Symbols: | ATPase, AAA-type, CDC48 protein | chr... 4135 0.0
AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division c... 2669 0.0
> AT5G03340.1 | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:809948-813228
REVERSE LENGTH=2671
Length=2671
Score = 4135 bits (2239), Expect = 0.0
Identities = 2384/2456 (97%), Gaps = 2/2456 (0%)
Strand=Plus/Plus
Query 11 AGCTATCACTATGTCAAACCAACCTGAATCTTCCGACTCGAAACCTAAGAAGGATTTCAG 70
|||||||| |||||||||| |||| ||||| |||||||||||| ||||||||||||||||
Sbjct 86 AGCTATCATTATGTCAAACGAACCGGAATCCTCCGACTCGAAAACTAAGAAGGATTTCAG 145
Query 71 TACTGCGATTCTCGAGAGGAAGAAGTCTCCAAACCGACTTGTTGTCGATGAAGCCATTAA 130
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 146 TACTGCGATTCTAGAGAGGAAGAAGTCTCCAAACCGACTTGTTGTCGATGAAGCTATTAA 205
Query 131 CGATGACAACTCTGTTGTCTCTCTCCATCCTGCTACCATGGAAAAGCTCCAGCTTTTCCG 190
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 206 CGATGACAACTCTGTTGTCTCTCTCCATCCTACTACCATGGAAAAACTCCAGCTTTTCCG 265
Query 191 AGGCGATACAATTCTCATCAAGGGTAAGAAGAGAAAGGACACTGTGTGCATTGCCCTTGC 250
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 266 AGGCGATACAATTCTCATCAAGGGTAAGAAGAGGAAGGACACTGTATGCATTGCCCTCGC 325
Query 251 TGATGAAACATGTGAGGAACCCAGGATCAGAATGAATAAGGTTGTAAGGTCTAACTTGAG 310
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 326 TGATGAAACATGTGAGGAACCCAAGATCAGAATGAATAAGGTTGTAAGGTCTAACTTGAG 385
Query 311 GGTTAGGCTGGGAGATGTTATTTCTGTTCACCAATGCCCAGATGTCAAGTATGGAAAGCG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GGTTAGGCTGGGAGATGTTATTTCTGTTCACCAATGCCCAGATGTCAAGTATGGAAAGCG 445
Query 371 TGTGCACATCTTGCCAGTTGATGATACAGTTGAAGGCGTTACTGGAAACCTTTTTGATGC 430
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 446 TGTTCACATCTTGCCTGTTGATGATACAGTTGAAGGCGTTACTGGAAACCTCTTTGATGC 505
Query 431 TTACCTTAAACCTTACTTCCTGGAGGCGTACCGCCCAGTGAGGAAGGGAGATCTTTTCCT 490
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 506 TTACCTGAAACCTTACTTTCTGGAGGCGTACCGTCCAGTGAGGAAGGGAGATCTTTTCCT 565
Query 491 AGTGAGAGGAGGAATGAGGAGTGTGGAGTTCAAAGTGATCGAGACTGATCCTGCTGAGTA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AGTGAGAGGAGGAATGAGGAGTGTGGAGTTCAAAGTGATCGAGACTGATCCTGCTGAGTA 625
Query 551 CTGTGTGGTGGCTCCAGATACAGAGATTTTCTGTGAGGGTGAACCAGTCAAGAGGGAAGA 610
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 626 CTGTGTGGTGGCTCCAGATACAGAGATTTTCTGTGAGGGTGAACCAGTTAAGAGGGAGGA 685
Query 611 CGAAGAAAGGCTTGATGAGGTCGGTTATGACGATGTTGGTGGTGTCAGGAAACAGATGGC 670
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 686 CGAAGAAAGGCTTGATGAGGTTGGTTATGACGATGTTGGTGGTGTCAGGAAACAGATGGC 745
Query 671 TCAGATTAGGGAATTGGTTGAACTTCCCTTGAGGCATCCACAACTCTTTAAATCAATTGG 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TCAGATTAGGGAATTGGTTGAACTTCCCTTGAGGCATCCACAACTCTTTAAATCAATTGG 805
Query 731 TGTGAAGCCACCAAAGGGAATTCTGCTTTATGGACCTCCTGGATCCGGGAAGACTCTTAT 790
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 806 TGTGAAGCCACCAAAGGGAATTCTGCTTTACGGACCTCCTGGATCCGGGAAGACTCTTAT 865
Query 791 TGCTCGTGCTGTGGCTAATGAAACCGGGGCATTTTTCTTCTGTATCAATGGACCGGAAAT 850
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 866 TGCTCGTGCTGTGGCTAATGAAACCGGAGCATTCTTCTTCTGTATCAATGGACCGGAAAT 925
Query 851 CATGTCCAAACTGGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGA 910
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CATGTCGAAACTAGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGA 985
Query 911 GAAGAATGCCCCTTCTATCATATTCATTGATGAGATTGACTCTATTGCACCAAAAAGAGA 970
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GAAGAATGCCCCGTCTATCATATTCATTGATGAGATTGACTCTATTGCACCAAAAAGAGA 1045
Query 971 GAAGACGAATGGTGAGGTTGAGAGGAGGATTGTCTCTCAGCTCCTTACGCTTATGGATGG 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GAAGACGAATGGTGAGGTTGAGAGGAGGATTGTCTCTCAGCTCCTTACGCTTATGGATGG 1105
Query 1031 ACTAAAATCACGTGCCCATGTTATTGTTATGGGAGCAACAAATCGCCCCAACAGTATTGA 1090
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1106 ACTAAAATCACGTGCCCATGTTATTGTTATGGGAGCAACAAATCGTCCCAACAGTATTGA 1165
Query 1091 TCCGGCTTTGAGAAGGTTTGGAAGATTCGACAGGGAAATTGATATCGGTGTTCCTGATGA 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TCCGGCTTTGAGAAGGTTTGGAAGATTCGACAGGGAAATTGATATCGGTGTTCCTGATGA 1225
Query 1151 AATTGGACGTCTTGAAGTTCTTAGGATCCACACAAAGAACATGAAGCTAGCTGAAGATGT 1210
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1226 AATTGGACGTCTTGAAGTTCTTAGGATCCACACGAAGAACATGAAGCTAGCTGAAGATGT 1285
Query 1211 GGATCTAGAAAGAATCTCCAAGGACACGCATGGATATGTTGGAGCTGATCTTGCAGCTCT 1270
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 TGATCTAGAAAGAATCTCCAAGGACACGCATGGATATGTTGGAGCTGATCTTGCAGCTCT 1345
Query 1271 ATGCACTGAAGCTGCCCTTCAATGTATCAGAGAGAAGATGGATGTGATTGACTTGGAAGA 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 ATGCACTGAAGCTGCCCTTCAATGTATCAGAGAGAAGATGGATGTGATTGACTTGGAAGA 1405
Query 1331 TGACTCAATTGACGCCGAAATCCTCAATTCCATGGCGGTGTCTAATGAACACTTCCACAC 1390
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1406 TGACTCAATTGACGCCGAAATCCTCAATTCCATGGCTGTGTCTAATGAACACTTCCACAC 1465
Query 1391 CGCTCTTGGAAACAGCAACCCATCCGCACTTCGTGAAACTGTTGTGGAGGTTCCAAATGT 1450
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1466 TGCTCTTGGAAACAGCAACCCATCCGCCCTTCGTGAAACTGTTGTGGAGGTTCCAAATGT 1525
Query 1451 CTCCTGGGAGGATATTGGAGGTCTTGAGAATGTTAAGAGAGAGCTTCAGGAGACTGTTCA 1510
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1526 CTCCTGGGAGGATATTGGAGGTCTCGAGAATGTTAAGAGAGAGCTTCAGGAGACTGTTCA 1585
Query 1511 ATACCCTGTTGAGCATCCAGAGAAATTCGAAAAGTTTGGTATGTCTCCATCAAAGGGAGT 1570
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1586 ATACCCTGTGGAGCATCCAGAGAAATTCGAGAAGTTTGGTATGTCTCCATCAAAGGGAGT 1645
Query 1571 TCTTTTCTACGGTCCTCCTGGATGTGGGAAAACCCTTTTAGCCAAAGCTATAGCAAACGA 1630
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1646 TCTTTTCTACGGTCCTCCTGGATGTGGTAAAACCCTGTTAGCCAAAGCTATAGCAAACGA 1705
Query 1631 GTGCCAAGCAAACTTCATCAGTGTCAAAGGACCTGAGCTTCTCACAATGTGGTTTGGAGA 1690
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1706 GTGCCAAGCAAACTTCATCAGTGTCAAGGGACCCGAGCTTCTCACAATGTGGTTTGGAGA 1765
Query 1691 AAGTGAAGCCAACGTCCGTGAAATCTTTGACAAGGCTCGTCAATCTGCTCCTTGTGTTCT 1750
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 AAGTGAAGCCAACGTCCGAGAAATCTTTGACAAGGCTCGTCAATCTGCTCCTTGTGTTCT 1825
Query 1751 GTTTTTCGATGAGCTCGACTCCATTGCTACTCAGAGAGGAAACAGCGTGGGTGATGCCGG 1810
||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1826 GTTTTTCGATGAGCTAGACTCCATTGCTACTCAGAGAGGGAACAGCGCGGGTGATGCCGG 1885
Query 1811 CGGTGCAGCTGATAGAGTGTTGAATCAGCTTCTGACAGAAATGGATGGAATGAATGCAAA 1870
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1886 CGGTGCAGCTGACAGAGTGTTGAATCAGCTTTTGACAGAAATGGATGGAATGAATGCAAA 1945
Query 1871 GAAGACGGTATTCATTATTGGAGCAACTAACAGGCCGGATATCATAGATCCAGCTCTTCT 1930
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1946 GAAGACGGTATTCATTATTGGAGCAACTAACAGACCGGATATCATAGATTCAGCTCTTCT 2005
Query 1931 TCGACCTGGAAGACTCGACCAGCTTATCTATATTCCTCTACCTGATGAAGATTCCCGTCT 1990
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2006 TCGACCTGGAAGACTCGACCAGCTTATCTACATTCCTCTACCTGATGAAGATTCCCGTCT 2065
Query 1991 CAATATCTTCAAGGCCTGCTTGAGAAAATCTCCTGTCGCTAAAGATGTAGATGTGACTGC 2050
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2066 CAATATCTTTAAGGCCTGCTTGAGAAAATCTCCCGTCGCTAAAGATGTAGATGTTACTGC 2125
Query 2051 ACTCGCTAAGTACACTCAGGGATTCAGTGGTGCTGATATCACTGAGATCTGCCAGAGAGC 2110
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2126 ACTCGCAAAGTACACTCAGGGATTCAGTGGTGCTGATATCACCGAGATCTGCCAGAGAGC 2185
Query 2111 TTGCAAGTACGCCATCAGAGAAAATATCGAAAAGGATATTGAGAAAGAGCGTAGAAGGAG 2170
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2186 TTGCAAGTACGCCATCAGAGAAAACATCGAAAAGGATATTGAGAACGAGCGTAGAAGGAG 2245
Query 2171 CGAGAATCCAGAGGCGATGGAGGAAGATATGGTGGATGATGAAGTTTCAGAGATTCGAGC 2230
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2246 CCAGAATCCAGAGGCCATGGAGGAAGATATGGTGGATGATGAAGTTTCAGAGATTAGAGC 2305
Query 2231 TGCTCATTTCGAAGAGTCGATGAAATATGCAAGGAGAAGTGTAAGTGATGCTGATATTCG 2290
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2306 TGCTCATTTCGAAGAGTCGATGAAATATGCAAGGAGAAGTGTGAGTGATGCTGATATTCG 2365
Query 2291 CAAGTACCAAGCTTTTGCTCAGACACTGCAGCAATCGAGAGGGTTTGGATCTGAGTTCAG 2350
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2366 CAAGTACCAAGCTTTTGCTCAGACGCTGCAGCAATCCAGAGGGTTTGGATCTGAGTTCAG 2425
Query 2351 GTTTGACTCAACCGCTTCTG-CGGGACGCACCATTGGTGGTGCACCCGCTGATCCCTTTG 2409
|||||||||||||||| || ||| |||||||| ||||| |||| |||| ||||||||||
Sbjct 2426 GTTTGACTCAACCGCTGGTGTCGG-ACGCACCACTGGTGTTGCAGCCGCCGATCCCTTTG 2484
Query 2410 CCACTTCTGCAGCTGCAGCTGATGACGACGATCTCTACAGTTAGATTATGATTTCT 2465
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2485 CCACTTCTGCAGCTGCAGCTGATGACGACGATCTCTACAGTTAGATTTTGATTTCT 2540
> AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division
cycle 48 | chr3:3019340-3023052 FORWARD LENGTH=2804
Length=2804
Score = 2669 bits (1445), Expect = 0.0
Identities = 2054/2350 (87%), Gaps = 34/2350 (1%)
Strand=Plus/Plus
Query 21 ATGTCAAACCAACCTGAATCTTCCGACTCGAAACCTAAGAAGGATTTCAGTACTGCGATT 80
||||| | || | |||||||||| ||||||||| | ||||| |||||||||||||| |||
Sbjct 155 ATGTCTACCCCAGCTGAATCTTCAGACTCGAAATCGAAGAAAGATTTCAGTACTGCTATT 214
Query 81 CTCGAGAGGAAGAAGTCTCCAAACCGACTTGTTGTCGATGAAGCCATTAACGATGACAAC 140
|||||||||||||||||||| ||||| || || |||||||| || || |||||||| |||
Sbjct 215 CTCGAGAGGAAGAAGTCTCCGAACCGTCTCGTCGTCGATGAGGCTATCAACGATGATAAC 274
Query 141 TCTGTTGTCTCTCTCCATCCTGCTACCATGGAAAAGCTCCAGCTTTTCCGAGGCGATACA 200
|| || |||||||| || ||||| |||||||| ||||| ||||| ||||| || |||||
Sbjct 275 TCCGTCGTCTCTCTTCACCCTGCAACCATGGAGAAGCTTCAGCTCTTCCGTGGTGATACC 334
Query 201 ATTCTCATCAAGGGTAAGAAGAGAAAGGACACTGTGTGCATTGCCCTTGCTGATGAAACA 260
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 335 ATTCTCATCAAGGGTAAGAAGAGGAAGGACACTGTCTGCATTGCTCTTGCTGATGAGACA 394
Query 261 TGTGAGGAACCCAGGATCAGAATGAATAAGGTTGTAAGGTCTAACTTGAGGGTTAGGCTG 320
|||||||| || | ||||||||||||||| || || || ||||||||||||||||| |||
Sbjct 395 TGTGAGGAGCCAAAGATCAGAATGAATAAAGTAGTCAGATCTAACTTGAGGGTTAGACTG 454
Query 321 GGAGATGTTATTTCTGTTCACCAATGCCCAGATGTCAAGTATGGAAAGCGTGTGCACATC 380
||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 455 GGAGATGTTATATCTGTTCACCAATGCCCAGACGTCAAGTACGGAAAGCGTGTTCACATC 514
Query 381 TTGCCAGTTGATGATACAGTTGAAGGCGTTACTGGAAACCTTTTTGATGCTTACCTTAAA 440
|||| ||||||||||| |||||||| || ||||||||||| |||||||||||||| |||
Sbjct 515 CTGCCTGTTGATGATACTGTTGAAGGAGTGACTGGAAACCTATTTGATGCTTACCTGAAA 574
Query 441 CCTTACTTCCTGGAGGCGTACCGCCCAGTGAGGAAGGGAGATCTTTTCCTAGTGAGAGGA 500
||||| ||||| ||||| ||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct 575 CCTTATTTCCTTGAGGCATACCGTCCAGTGAGGAAGGGTGATCTCTTCCTAGTCAGAGGA 634
Query 501 GGAATGAGGAGTGTGGAGTTCAAAGTGATCGAGACTGATCCTGCTGAGTACTGTGTGGTG 560
|||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct 635 GGAATGAGGAGTGTGGAGTTCAAAGTTATAGAGACAGATCCTGCTGAGTACTGCGTGGTT 694
Query 561 GCTCCAGATACAGAGATTTTCTGTGAGGGTGAACCAGTCAAGAGGGAAGACGAAGAAAGG 620
|||||||| ||||||||||||||||||||||| || || ||||| || || |||||||||
Sbjct 695 GCTCCAGACACAGAGATTTTCTGTGAGGGTGAGCCTGTGAAGAGAGAGGATGAAGAAAGG 754
Query 621 CTTGATGAGGTCGGTTATGACGATGTTGGTGGTGTCAGGAAACAGATGGCTCAGATTAGG 680
|| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 755 CTAGATGATGTAGGTTATGATGATGTTGGTGGTGTCAGGAAACAGATGGCTCAGATTAGG 814
Query 681 GAA-TTGGTTGAACTTCCCTTGAGGCATCCACAACTCTTTAAATCAATTGGTGTGAAGCC 739
||| ||| ||||||||||||||||||||||||| || || || || |||||||| |||||
Sbjct 815 GAACTTG-TTGAACTTCCCTTGAGGCATCCACAGCTATTCAAGTCGATTGGTGTTAAGCC 873
Query 740 ACCAAAGGGAATTCTGCTTTATGGACCTCCTGGATCCGGGAAGACTCTT-ATTGCTCGTG 798
||| ||||||||||| ||||||||||| ||||| || || |||||| || || |||||||
Sbjct 874 ACCGAAGGGAATTCTTCTTTATGGACCACCTGGGTCTGGAAAGACT-TTGATCGCTCGTG 932
Query 799 CTGTGGCTAATGAAACCGGG-GCATTTTTCTTCTGTATCAATGGACCGGAAATCATGTCC 857
|||||||||||||||| ||| || ||||||||||||||||| ||||| || |||||||||
Sbjct 933 CTGTGGCTAATGAAAC-GGGTGCCTTTTTCTTCTGTATCAACGGACCTGAGATCATGTCC 991
Query 858 AAACTGGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGAGAAGAAT 917
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 992 AAATTGGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTCGAGGAGGCTGAGAAAAAT 1051
Query 918 GCCCCTTCTATCATATTCATTGATGAGATTGACTCTATTGCACCAAAAAGAGAGAAGACG 977
|| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1052 GCGCCTTCAATCATATTCATTGATGAGATCGACTCTATTGCACCGAAAAGAGAGAAGACT 1111
Query 978 AATGGTGAGGTTGAGAGGAGGATTGTCTCTCAGCTCCTTACGCTTATGGATGGACTAAAA 1037
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1112 AATGGAGAGGTTGAGAGGAGGATTGTCTCTCAGCTCCTTACGCTAATGGATGGACTGAAA 1171
Query 1038 TCACGTGCCCATGTTATTGTTATGGGAGCAACAAATCGCCCCAACAGTATTGATCCGGCT 1097
|| ||||| |||||||| || ||||||||||| ||||||||||||||||| || || |||
Sbjct 1172 TCTCGTGCTCATGTTATCGTCATGGGAGCAACCAATCGCCCCAACAGTATCGACCCAGCT 1231
Query 1098 TTGAGAAGGTTTGGAAGATTCGACAGGGAAATTGATATCGGTGTTCCTGATGAAATTGGA 1157
|||||||||||||||||||| |||||||| || ||||| || |||||||| |||||||||
Sbjct 1232 TTGAGAAGGTTTGGAAGATTTGACAGGGAGATCGATATTGGAGTTCCTGACGAAATTGGA 1291
Query 1158 CGTCTTGAAGTTCTTAGGATCCACACAAAGAACATGAAGCTAGCTGAAGATGTGGATCTA 1217
|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1292 CGTCTTGAAGTTCTGAGGATCCATACAAAGAACATGAAGCTGGCTGAAGATGTGGATCTC 1351
Query 1218 GAAAGAATCTCCAAGGACACGCATGGATATGTTGGAGCTGATCTTGCAGCTCTATGCACT 1277
||||| ||||| |||||||| || || || || || ||||||||||||||| | |||||
Sbjct 1352 GAAAGGATCTCAAAGGACACACACGGTTACGTCGGTGCTGATCTTGCAGCTTTGTGCACA 1411
Query 1278 GAAGCTGCCCTTCAATGTATCAGAGAGAAGATGGATGTGATTGA-CTTGGAAGATGACTC 1336
|| || ||||| ||||| ||||| |||||||||||||||||||| || ||||||||||||
Sbjct 1412 GAGGCCGCCCTGCAATGCATCAGGGAGAAGATGGATGTGATTGATCT-GGAAGATGACTC 1470
Query 1337 AATTGACGCCGAAATCCTCAATTCCATGGCGGTGTCTAATGAACACTTCCACACCGCTCT 1396
|| ||||| |||||||||||||||||||| || |||||||||| |||||||| |||||
Sbjct 1471 CATAGACGCTGAAATCCTCAATTCCATGGCAGTCACTAATGAACATTTCCACACTGCTCT 1530
Query 1397 TGGAAACAGCAACCCATCCGCACTTCGTGAAACTGTTGTGGAGGTTCCAAATGTCTCCTG 1456
|| |||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1531 CGGGAACAGCAACCCATCTGCACTTCGTGAAACTGTTGTGGAGGTTCCCAACGTCTCTTG 1590
Query 1457 GGAGGATATTGGAGGTCTTGAGAATGTTAAGAGAGAGCTTCAGGAGACTGTTCAATACCC 1516
| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1591 GAATGATATTGGAGGTCTTGAGAATGTCAAGAGAGAGCTCCAGGAGACTGTTCAATACCC 1650
Query 1517 TGTTGAGCATCCAGAGAAATTCGA-AAAGTTTGGTATGTCTCCATCAAAGGGAGTTCTTT 1575
|| ||||| |||||||| || || ||| || || |||||||||||||||||||| ||||
Sbjct 1651 AGTCGAGCACCCAGAGAAGTTTGAGAAA-TTCGGGATGTCTCCATCAAAGGGAGTCCTTT 1709
Query 1576 TCTACGGTCCTCCTGGATGTGGGAAAACCCTTTTAGCCAAAGCTATAGCAAACGAGTGCC 1635
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1710 TCTACGGTCCTCCTGGATGTGGGAAAACCCTTTTGGCCAAAGCTATTGCCAACGAGTGCC 1769
Query 1636 AAGCAAACTTCATCAGTGTCAAAGGACCTGAGCTTCTCACAATGTGGTTTGGAGAAAGTG 1695
|||| || |||||||||||||| || || |||||||| ||||||||||||||||| ||||
Sbjct 1770 AAGCTAATTTCATCAGTGTCAAGGGTCCCGAGCTTCTGACAATGTGGTTTGGAGAGAGTG 1829
Query 1696 AAGCCAACGTCCGTGAAATCTTTGACAAGGCTCGTCAATCTGCTCCTTGTGTTCTGTT-T 1754
|||| || || ||||||||||| |||||||| |||||||| ||||| |||||||| || |
Sbjct 1830 AAGCAAATGTTCGTGAAATCTTCGACAAGGCCCGTCAATCCGCTCCATGTGTTCTTTTCT 1889
Query 1755 TTCGATGAGCTCGACTCCATTGCTACTCAGAGAGGAAACAGC-GTGG-GT-GATGCCGGC 1811
|| |||||||||||||||||||| |||||||||||| | |||| | |||| ||
Sbjct 1890 TT-GATGAGCTCGACTCCATTGCAACTCAGAGAGGAGGTGGAAGTGGTGGCGATGGAGGT 1948
Query 1812 GGTGCAGCTGATAGAGTGTTGAATCAGCTTCTGACAGAAATGGATGGAATGAATGCAAAG 1871
||||| || || ||||| ||||| |||||| |||| || ||||| ||||||||||| |||
Sbjct 1949 GGTGCTGCGGACAGAGTCTTGAACCAGCTTTTGACTGAGATGGACGGAATGAATGCCAAG 2008
Query 1872 AAGACGGTATTCATTATTGGAGCAACTAACAGGCCGGATATCATAGATCCAGCTCTTCTT 1931
|| || || ||||| || ||||| || ||||| || || || || ||| ||||||||||
Sbjct 2009 AAAACCGTCTTCATCATCGGAGCTACCAACAGACCTGACATTATCGATTCAGCTCTTCTC 2068
Query 1932 CGACCTGGAAGACTCGACCAGCTTATCTATATTCCTCTACCTGATGAAGATTCCCGTCTC 1991
|| |||||||| || |||||||| || || ||||| ||||| ||||| ||||||||||||
Sbjct 2069 CGTCCTGGAAGGCTTGACCAGCTCATTTACATTCCACTACCAGATGAGGATTCCCGTCTC 2128
Query 1992 AATATCTTCAAGGCCTGC-TTGAGAAAATCTCCTGTCGCTAAAGATGTAGATGT-GACTG 2049
||||||||||||||| || ||||| ||||||||| | |||||||||||||| | | ||
Sbjct 2129 AATATCTTCAAGGCC-GCCTTGAGGAAATCTCCTATTGCTAAAGATGTAGACATCGG-TG 2186
Query 2050 CACTCGCTAAGTACACTCAGGGATTCAGTGGTGCTGATATCACTGAGATCTGCCAGAGAG 2109
|||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2187 CACTTGCTAAATACACTCAGGGTTTCAGTGGTGCTGATATCACTGAGATTTGCCAGAGAG 2246
Query 2110 CTTGCAAGTACGCCATCAGAGAAAATATCGAAAAGGATATTGAGAAAGAGCGTAGA--AG 2167
||||||||||||||||||||||||| || || ||||| ||||| |||| | | ||| ||
Sbjct 2247 CTTGCAAGTACGCCATCAGAGAAAACATTGAGAAGGACATTGA-AAAG-GAGAAGAGGAG 2304
Query 2168 GAGCGAGAATCCAGAGGCGATGGAGGAAGATATG-GTGGATGATGAAGTTTCAGAGATTC 2226
||||||||| |||||||| |||||||||||| | |||||||| | || |||||||| |
Sbjct 2305 GAGCGAGAACCCAGAGGCAATGGAGGAAGATG-GAGTGGATGA--A-GTATCAGAGAT-C 2359
Query 2227 GA-GCTGCTCA-TTTCGAAGAGTCGATGAAATATGCAAGGAGAAGTGTAAGTGATGCTGA 2284
| ||||| || ||| || ||||||||||| ||||| | || ||||| |||||||| ||
Sbjct 2360 AAAGCTGCACACTTT-GAGGAGTCGATGAAGTATGCGCGTAGGAGTGTGAGTGATGCAGA 2418
Query 2285 TATTC-GCAAGTACCAAGCTTTTGCTCAGACACTGCAGCAATCGAGAGGGTTTGGATCTG 2343
|| | | ||||||||||| ||||||||||| ||||||| || |||||||| || ||||
Sbjct 2419 CAT-CAGGAAGTACCAAGCCTTTGCTCAGACGTTGCAGCAGTCTAGAGGGTTCGGTTCTG 2477
Query 2344 AGTTCAGGTT 2353
||||||||||
Sbjct 2478 AGTTCAGGTT 2487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122708342578
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5