BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939780

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03905.1 | Symbols:  | Iron-sulphur cluster biosynthesis fam...   736    0.0  


> AT5G03905.1 | Symbols:  | Iron-sulphur cluster biosynthesis family 
protein | chr5:1052580-1054274 FORWARD LENGTH=858
Length=858

 Score =  736 bits (398),  Expect = 0.0
 Identities = 470/505 (93%), Gaps = 3/505 (1%)
 Strand=Plus/Plus

Query  15   AAAATC-ATGTCGAGATCTCTGTTGAAACGCGTTGCTCCTTATTTGGCTGGTCGGATTAG  73
            |||| | ||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  142  AAAAACTATGTCAAGATCTCTGGTGAAACGCGTTGCTCCTTATTTGGCTGGTCGGATTAG  201

Query  74   AGAAAATCATCGATTGCTTAATTTttcttctgcttctgctctcaaagaagcttcttcttc  133
            |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct  202  AGAAAATCATCGATTGCTTAATTTTTCTTCTGCTTCTGCTATCAAAGAAGCATCTTCTTC  261

Query  134  ttcttcttcccaatctgaatcgtcttctATTGATGTCGTCCATCTCAGCGACAATTGTAT  193
            |||||| |||||| ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  262  TTCTTCGTCCCAACCTGAATCGTCTTCTAATGATGTAGTCCATCTCAGCGACAATTGTAT  321

Query  194  CCGGAGGATGAAAGAGTTACAATCTACTGAGCCGGAAAAGAAACTGCTTCGCTTGGGCGT  253
            |||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  322  CCGGAGAATGAAAGAGTTACAATCTAGTGAGCCGGAAAAGAAAATGCTTCGCTTGGGCGT  381

Query  254  AGAGACGGGAGGGTGTTCTGGTTTCCAGTATGTGTTTGAGCTTGATAATAGAACCAATCC  313
            |||||| ||||| ||||||||||||||||||  |||||||||||||||||||||||| ||
Sbjct  382  AGAGACAGGAGGATGTTCTGGTTTCCAGTATAAGTTTGAGCTTGATAATAGAACCAACCC  441

Query  314  TGATGACAGGGTTTTCGAGAAGAATGGTGTCAAATTGGTTGTAGATAATGTTTCATACGA  373
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  442  TGATGACAGGGTTTTCGAGAAGAATGGTGTCAAATTGGTTGTCGATAATGTTTCATACGA  501

Query  374  CTTCGTTAAAGGTGCTACGGTTGATTATGTCGAGGAACTGATCCGTGCTGCTTTTGTGGT  433
            ||| || |||||||||||  |||||||||  |||||| |||||||||||||||| |||||
Sbjct  502  CTTGGTGAAAGGTGCTACAATTGATTATGAGGAGGAATTGATCCGTGCTGCTTTCGTGGT  561

Query  434  AGCTGAAAACCCGGCCGCAGTAGGTGGATGCAGTTGTAAAAGCTCCTTCATGGTGAAACA  493
            ||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| 
Sbjct  562  AGCTGTAAACCCGTCCGCAGTGGGTGGGTGCAGTTGTAAAAGCTCCTTCATGGTGAAACT  621

Query  494  GTGAATCATTGACTCAATCTT-CTT  517
             |||||||||||||||| ||| |||
Sbjct  622  CTGAATCATTGACTCAA-CTTTCTT  645



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24765434471


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5