BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939822
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04250.1 | Symbols: | Cysteine proteinases superfamily prot... 1696 0.0
> AT5G04250.1 | Symbols: | Cysteine proteinases superfamily protein
| chr5:1176008-1178700 FORWARD LENGTH=1461
Length=1461
Score = 1696 bits (918), Expect = 0.0
Identities = 1005/1048 (96%), Gaps = 2/1048 (0%)
Strand=Plus/Plus
Query 12 TTTGAATAAATGGGGTATGAGCCTGATCCCGATGCTCTTCGCTGGGGTCTTCATGATCTG 71
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 207 TTTGAATAAATGGGGTATGAGCCTGATCCAGATGCTCTTAGGTGGGGTCTTCATGATCTG 266
Query 72 GAGGTTTGTACACTTACAAATGCTGGTTCTTGCTCTAGTGTAACAAGGTATGAGTCAGGT 131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 267 GAGGTTTGTACACTTACAAATGCTGGTTCTTGCTCTAGTGTAACAAGGTATGAGTCTGGT 326
Query 132 GGTGCTGGTACTCAAGGCTATGTTAGAGAAGGTTATAATCAGCCTTTGACTGGTTATGTA 191
|||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 327 GGTGGTGGTACTCAAGGCTATGTTAGAGAAGGTTACAATCAGCCTGTGACTGGTTATGTT 386
Query 192 GACAATGATGCGGCAATTGCTCAGTTTTATCAAGACGAATTGTCTAGAGTTGCTCGAGCC 251
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GACAATGATGCGGTGATTGCTCAGTTTTATCAAGACGAATTGTCTAGAGTTGCTCGAGCC 446
Query 252 GAAGCATCGGGCCTCAATAATCTTAGTCCTACTTCTGTTGTTGAACAAGAGTGGCCTCAT 311
||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 447 GAAGCATCGGGGATCAATAGTCTTAGTCCTACTTCTGTTGTTGCACAAGACTGGCCTCAT 506
Query 312 CCTCGTCAAGGGCAGGAAAATCAAGGGGAAGCCATTGATA-TATCCCGGGAAAGTGATAT 370
|||| |||||| |||||||||||||||||||||||||||| || | | ||||||||||||
Sbjct 507 CCTCATCAAGGACAGGAAAATCAAGGGGAAGCCATTGATATTA-CTCAGGAAAGTGATAT 565
Query 371 TCTTCATGATCATAACTGTAACATGGAAGATAAGAATGTTGCAAGGATAAGATTTCAAGG 430
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 566 TCTTCATAATCATAACGGTAACATGGAAGATAAGAATGTTGCAAGGATAAGATTTGAAGG 625
Query 431 AGGACAAAGTTCCCCACCTCGTGATGATGACTCAGTTTGTTCTGTAGAAATAGAAGAAGA 490
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 AGGGCAAAGTTCCCCATCTCGTGATGATGACTCAGTTTGTTCTGTAGAAATAGAAGAAGA 685
Query 491 ATCTTGGTCAGAGGTTGGGAAGCGACTGAATCAAATGATACCTATTGCTCACGTGCCGAA 550
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 686 ATCTTGGTCAGAGGTTGGGAAGCGACTGAACCAAATGATACCTATTGCTCATGTGCCGAA 745
Query 551 AATCAATGGGGAATTACCGTCAGAGGATGAACAGATATCTGATCATGAACGGCTATTTCA 610
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 746 AATCAATGGGGAATTACCGTCAGAGGATGAGCAGATTTCTGATCATGAACGGCTATTTCA 805
Query 611 GAGATTACAGCTTTATGGCTTGGTGGAGAACAAGATTGAAGGAGATGGAAATTGTCAGTT 670
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 806 GAGATTACAGCTTTATGGCTTGGTGGAGAACAAGATTGAAGGAGATGGAAACTGCCAGTT 865
Query 671 TCGGTCACTATCAGACCAGCTTTACCGCTCTCCAGAACACCATAACTTTGTCAGAGAACA 730
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 866 TCGGTCACTATCAGACCAGCTTTACCGCTCTCCAGAACATCATAATTTTGTCAGAGAACA 925
Query 731 AGTTGTTAATCAGCTTGCATATAATCGAGAGATATATGAAGGTTATGTTCCAATGGCGTA 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 AGTTGTTAATCAGCTTGCATATAATCGAGAGATATATGAAGGTTATGTTCCAATGGCGTA 985
Query 791 CAATGACTATCTTAAAGCAATGAAACGGAATGGAGAATGGGGTGATCACGTTACTCTTCA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CAATGACTATCTTAAAGCAATGAAACGGAATGGAGAATGGGGTGATCACGTTACTCTTCA 1045
Query 851 GGCTGCTGCGGATTGGTTTGGTGTTCGGATGTTTGTGATAACGTCATTCAAGGATACATG 910
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1046 GGCTGCTGCGGATTTGTTTGGTGTTCGGATGTTTGTGATAACTTCATTCAAGGATACATG 1105
Query 911 TTACATTGAGATCTTGCCGCATTTTCAGAAGTCTAATCGCCTTATATGTTTGAGCTTCTG 970
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1106 CTACATTGAGATCTTGCCTCATTTTCAGAAGTCTAATCGCCTTATATGTTTAAGCTTCTG 1165
Query 971 GGCTGAGGTTCATTACAATTCAATCTATCCTGAAGGAGAGCTGCCCATACCGGAAGGCAA 1030
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1166 GGCTGAGGTTCATTACAATTCAATCTACCCTGAAGGAGAGCTGCCGATACCAGAAGGCAA 1225
Query 1031 GAAGAAGAAGAAATATTGGGTTTTCTGA 1058
||||||||||||||||||||| ||||||
Sbjct 1226 GAAGAAGAAGAAATATTGGGTATTCTGA 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5