BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939856 Length=1842 Score E Sequences producing significant alignments: (Bits) Value AT5G04550.1 | Symbols: | Protein of unknown function (DUF668) ... 2981 0.0 > AT5G04550.1 | Symbols: | Protein of unknown function (DUF668) | chr5:1303180-1306116 REVERSE LENGTH=2580 Length=2580 Score = 2981 bits (1614), Expect = 0.0 Identities = 1750/1817 (96%), Gaps = 4/1817 (0%) Strand=Plus/Plus Query 9 GGTTGAGAGAGGATGGTTTCAGAGACTTGGTTTCGTAATCTGTGGAGGTTTCCAAAGAAA 68 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 GGTTGAGAGAAGATGGTTTCAGAGACTTGGTTTCGTAATCTGTGGAGGTTTCCAAAGAAA 251 Query 69 CATGATGTTCATAAAGATAAGGCGGTGCTCGGAGTATTAGCGTTTGAGGTTGCGAGTTTG 128 ||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 252 CATGATGGTCATAAAGATAAGGCGGTTCTAGGAGTATTAGCGTTTGAGGTTGCGAGTTTG 311 Query 129 TTGTCGAAGCTTGTTCATTTGTGGCAGTCACTAAGTGATAAGAATGTTGCAAGGCTTAGG 188 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 312 TTGTCGAAGCTTGTTCATTTGTGGCAGTCATTAAGTGATAAGAATGTTGCAAGGCTTAGG 371 Query 189 GACGAGATTACGCATTCCACCGGTATAAAGAAGCTAGTTTCAGAGGACGATGATTTTATC 248 ||||||||||| |||||||| |||||||||||| |||||||||| || ||||||||||| Sbjct 372 GACGAGATTACACATTCCACTGGTATAAAGAAGTTAGTTTCAGAAGATGATGATTTTATT 431 Query 249 GTCAGGTTGATACGCGATGAAATGATGGAGAACGTTGAGAATGTAGCGAAAGCTGTTGCT 308 || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 432 GTGAGGTTAATACGTGATGAAATGATGGAGAACGTTGAGAATGTAGCGAAAGCTGTGGCT 491 Query 309 AGGCTTGCGAGGAAATGCAACGATCCCAAGTTGAAATGCTTTGAGAATTGTTTTAGTGAT 368 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 492 AGGCTTGCGAGGAAATGCAACGATCCCAAGTTGAAGTGCTTTGAGAATTGTTTTAGTGAT 551 Query 369 ATGATGAAGACTGGAGCTGACCCTTATGGGTGGCAGTTTGGGTGGAAGAAAATGGATAAG 428 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 552 ATGATGAAGACTGGAGCTGACCCTTATGGTTGGCAGTTTGGGTGGAAGAAAATGGATAAG 611 Query 429 AAAGCAAAGAAAATGGAACGTTTCATCTCATCAAATGCTAGCCTCTACCAGGAGACTGAG 488 ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 612 AAAGCTAAGAAAATGGAACGTTTCATATCATCTAATGCTAGTCTCTACCAGGAGACTGAG 671 Query 489 ATTCTGGCCGATCTTGAACAGACTTTCAAGAGAATGAAGAGCAATGAATCTGCAACTGAC 548 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 672 ATTCTTGCTGATCTTGAACAGACTTTCAAGAGAATGAAGAGCAATGAATCTGCTACTGAC 731 Query 549 AATCTTTTGGAGTATCAGAAAAAAGTTACATGGAAAAGACATGAAGTGAAGAATCTGCGG 608 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 732 AATCTTTTGGAGTATCAGAAAAAAGTTACATGGAAAAGACACGAAGTGAAGAATCTGCGG 791 Query 609 GATGTGTCTCTTTGGAACCGTACTTATGACTATACCGTCCTTCTCTTGGTTAGATCAGTT 668 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 792 GATGTGTCTCTTTGGAACCGTACTTATGACTATACCGTCATTCTCTTGGTTAGATCAGTT 851 Query 669 TTCACAATCCTTAGCAGGACTAAACATGTTTTTGGC-TTGAGTTACAGAATGGAAGCAAG 727 |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 852 TTCACAATCCTTAGCAGGACTAAACATGTTTTTGGCATT-AGTTACAGAGTGGAAGCAAG 910 Query 728 TGATGTTAGCTCTGCAGATTCTGATTTCATTGGCCGCAGCCACTCGGTTTCTACAATTTT 787 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 911 TGATGTTAGCTCTGCAGATTCTGATTTTATTGGCCGCAGCCACTCCGTTTCTACTATTTT 970 Query 788 AACTCCTGTATCTCATAAATCTGAGACTAGCGGTCTTCCTAGATTTGCTTCTGGTCCCCT 847 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| Sbjct 971 AACTCCTGTATCTCATAAATCTGAGTCTAGTGGTCTTCCTAGATTTGCTTCTGGCCCCCT 1030 Query 848 TGGAAGATTTACCGGTCCAGCATCAGGTTCAGCTGCTACAAGGTCCACGAAGATGAGTGA 907 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1031 TGGAAGATTTACCGGTCCAGCATCGGGTTCAGCTGCTACAAGGTCCACGAAGATGAGTGA 1090 Query 908 TTTCCTTTCCGGTTCTCTCAGCGCCGAATCCCCTAAGTCAGGTCCTCTTGTTGCAGAAAA 967 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1091 TTTCCTTTCGGGTTCTCTCAGCGCCGAATCACCTAAGTCAGGTCCTCTTGTTGCAGAAAA 1150 Query 968 ACACAAACGTTTCAAGTTTTACTCAGGCCAGCTCGGGAAAATCACCTCCAAATCAGGACC 1027 |||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| Sbjct 1151 ACACAAACGTTTCAAGTTTTACTCTGGTCAGCTTGGGAAGATCACCTCCAAATCAGGACC 1210 Query 1028 ACTTATCGGAATGGGCAAAAACAACAAGAAGATGGGGCAGACACCGGAAAGACCTTCAAT 1087 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1211 ACTTATCGGAATGGGCAAAAACAACAAGAAGATGGGGCAGACCCCGGAAAGGCCTTCAAT 1270 Query 1088 TTCCTCAGTGAAAAAGCAATTGAAAGCCAACCGGTTAACACAGGTTGGCCCGTTTAAAGG 1147 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1271 TTCCTCAGTGAAAAAGCAATTGAAAGCCAACCGATTAACACAGGTTGGCCCATTTAAAGG 1330 Query 1148 CTGTATGGTGTCTCACGATGGGATTACTCCTCTCAGCACTAAGACCCGGAATGGAGCTAG 1207 ||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| Sbjct 1331 CTGTATGGTGTCTCACGATGGGATTACGCCTCTCAGCACTAGGGCCCGGAATGGAGCTAG 1390 Query 1208 GAATAGTAGTGCTGAGCATCACATTCTTGAAGGA-AATTCTAACTCTGTCCACGTTGAAA 1266 ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 1391 GAATAGTAGTGCTGAGCATCACATTCTTGAA-GATAATTCTAACTCTGTTCACGTTGAAA 1449 Query 1267 ACTTGACACTTCCTACCCGACCTAAGTTGTCAGATGCTGCTCCTAATACCCTTGGTGCAG 1326 |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| | | Sbjct 1450 ACTTGACACTTCCTTCCCGACCCAAGCTGTCAGATGCTGCTCCTAATACCCTTGGTACCG 1509 Query 1327 CTTGCTTAGCATTACACTATGCAAATGTCATCATCGTGATAGAGAGATTTGTTGCATCTC 1386 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1510 CTTGCTTAGCATTACACTATGCTAATGTCATCATCGTGATAGAGAGATTTGTTGCGTCTC 1569 Query 1387 CTCACTTGATAGGCGATGATGCAAGAGACGACCTTTACAACATGTTACCGGCGAGCGTGA 1446 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1570 CTCACTTGATAGGAGATGATGCAAGAGACGACCTTTACAACATGTTACCGGCGAGCGTGA 1629 Query 1447 GAACATCGCTTAGAGAAAGGCTAAAACCGTACTCGAAAAACTTGAGTTCTTCCACAGTTT 1506 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1630 GAACATCGCTTAGAGAAAGGCTAAAACCTTACTCGAAAAACTTGAGTTCTTCCACAGTTT 1689 Query 1507 ATGATCCAGGACTAGCAAAAGAATGGACAGACGCAATGGCGGGTATCTTGGAATGGTTGG 1566 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1690 ATGATCCAGGCCTAGCAAGAGAATGGACAGACGCAATGGCGGGTATCTTGGAATGGTTGG 1749 Query 1567 GTCCATTAGCTCACAACATGATAAAATGGCAATCTGAGCGGAGTTACGAGCACCAAAGCT 1626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1750 GTCCATTAGCTCACAACATGATAAAATGGCAATCTGAGCGGAGTTACGAGCACCAAAGCT 1809 Query 1627 TGGTTTCAAGGACGCACATAGTTCTTGCACAAACCCTTTTCTTTGCAAACCAGCAGAAGA 1686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1810 TGGTTTCAAGGACGCACATAGTTCTTGCACAAACCCTTTTCTTTGCAAACCAGCAGAAGA 1869 Query 1687 CAGAAGCCATCATTACCGAGCTTCTTGTTGGCCTCAATTATGTCTGGAGATTTGGCAGAG 1746 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1870 CAGAAGCCATCATTACCGAGCTTCTCGTAGGCCTCAATTATGTCTGGAGATTTGGCAGAG 1929 Query 1747 AACTTAACGCCAAGGCTCTTCAGGAGTGTACCAGTAGTAAAACCCTTGAGAAATGCTTGG 1806 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1930 AACTCAATGCCAAGGCTCTTCAGGAGTGTACCAGTAGTAAAACCCTTGAGAAATGCTTGG 1989 Query 1807 ACACAGATAACTAGTGA 1823 ||||||||||||||||| Sbjct 1990 ACACAGATAACTAGTGA 2006 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91164189720 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5