BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939938
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05190.1 | Symbols: | Protein of unknown function (DUF3133)... 1509 0.0
> AT5G05190.1 | Symbols: | Protein of unknown function (DUF3133)
| chr5:1541521-1544137 FORWARD LENGTH=2442
Length=2442
Score = 1509 bits (817), Expect = 0.0
Identities = 945/1008 (94%), Gaps = 4/1008 (0%)
Strand=Plus/Plus
Query 4 TTG-AATTTGGTACCAACAATGGCGAGCCAGAAGGGTCAGAAAATCCGGTTGGTGAAATG 62
||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||
Sbjct 314 TTGAAATTTGGTACCAACAATGGCGAGCCAGACGGGTCAGAAAATTCGGTTGGTGAGGTG 373
Query 63 CCCCAAGTGCTTTAAGATTCTACAGGAAGACGAAGATGTTCCTGTTTATCAGTGTGGTGG 122
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 374 TCCCAAGTGCTTGAAGATTCTACAGGAAGACGAAGATGTTCCTGTTTATCAGTGCGGTGG 433
Query 123 TTGTTCCGCCATTCTTCAAGCGAAAAAGCGAAACACTGCTCCAAACAGTACACCAAGTGC 182
|||||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||
Sbjct 434 TTGTTCCGCCATTCTTCAAGCGAAAAGGCGGAACATTGCTCCAAGCAGTACACCAAGTGC 493
Query 183 AGGAGAGACAGAGAGGGCTCAAGCTAATGAGCCGCGAAGCGTACCTGAAACCAACAATAT 242
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
Sbjct 494 AGGAGAGACAGAGAGGGCTCAAGCCAATGAGCCGCAAAGCGTACCTGAAACCAACAATGT 553
Query 243 GTCCAGCAGCTCGGGGCAGGACACGGTTCTTCCGTCATCCCCAGGTCCTTCTGCGGACCA 302
|||||||||||||||||||||||||||||| |||||||| ||||||| ||| | ||||||
Sbjct 554 GTCCAGCAGCTCGGGGCAGGACACGGTTCTGCCGTCATCTCCAGGTCGTTCCGTGGACCA 613
Query 303 AGAGTATGAGAAAGGTAGGAATGCATCAATGGAGTCTACGGAGAAGGAGCTTGATGAGTT 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 614 AGAGTATGAGAAAGGTAGGAATGCATCCATGGAGTCTACGGAGAAGGAGCTTGATGACTT 673
Query 363 AGAGTTATCGAATGGAGATGGGACAAATGAAATTCAAGAGCAGGAACGTTCAGTTGGTGA 422
||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 674 AGAGTTATCTAATGGAGATGGGACAAATGAAATTCAAGAGCAGGAATGTTCACTTGGTGA 733
Query 423 TTCTGAGAAGAATGAAGGAGGAGACATTTCCAGATTGGAGTCTCATATGATGAACAGCGT 482
|||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 734 TTCTGAGAAGAATGAAAGAGAAGACAACTCCAGATTGGAGTCTCATATGATGAACACCGT 793
Query 483 GGCAGAAGCTGCAGGATCTGGGGCTAGCTCTGGAAGCTTGAGTGTTGATCATTTGGTGGC 542
|||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct 794 AGCAGAAGCTGCAGGATCTGGATCTAGCTCTGGAAGCTTGAGCGTTGATCATGTGGTGGC 853
Query 543 TGCAAGAGCGAGTAATCCATCTGGTAACGCTAAAATTTCACCAGATGCTTCCCTTGTTGA 602
||||||||||||||||||||| |||||| || | |||||||| |||||||||| || ||
Sbjct 854 TGCAAGAGCGAGTAATCCATCCGGTAACTCTGAGATTTCACCGGATGCTTCCCCCGTAGA 913
Query 603 AGAGGAGCAAAGCCAAGTTGATTTTCTAGCAAACAAGACT-C--CTGCTTATGATGTGGT 659
|||| ||||||||||| |||| |||| |||||||||||| | ||||||||||||||||
Sbjct 914 AGAGAAGCAAAGCCAACTTGACATTCTTGCAAACAAGACTCCTTCTGCTTATGATGTGGT 973
Query 660 GGCTGCAAGAGCGAGTAATTCATCTGGTAATGCTGAGATCTCACCTGATGCTTCCCCTGT 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 974 GGCTGCAAGAGCGAGTAATTCATCTGGCAATGCTGAGATCTCACCTGATGCTTCCCCTGT 1033
Query 720 TGAAGAGAAGCAAAGCCAACTTGATTATCCTGCAAACAAGACTTCTTCTGCTTATGATGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TGAAGAGAAGCAAAGCCAACTTGATTATCCTGCAAACAAGACTTCTTCTGCTTATGATGG 1093
Query 780 GAGTGAGTCTTCGTCTGATGAAAGGGAAGACCAACTTCTCGATGATAACGAACAATGGAA 839
|||||||||||| ||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct 1094 GAGTGAGTCTTCCTCTGACGAAAGGGAAGGCCAACTTCTCGATGATGACGAACAATGGAA 1153
Query 840 TGCTCTTCAGAAAATAAGATCAGGCAAATTTGAGATGCATAGATATCCTGGATATAAGGA 899
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1154 TGCTCTTCAGAAAATAAGATCAGGCAAATTTGAGATGCATAGATACCCTGGGTATAAGGA 1213
Query 900 GCAAGGCGCTAGCTCCTCCTCCCCTTTCTCTGAGGATAGGCGCAATGGGATTACCACATA 959
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1214 GCAAGGCGCTAGTTCCTCCTCCCCTTTCTCTGAGAATAGGCGCAATGGGATTACCACATA 1273
Query 960 TAACGAGCGGCATCAGAACAGGTCTCTGCAACTAGAGGGACCAGGAGG 1007
|||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1274 CAACGAGCGGCATCAGAACAGGTCTCTACAGCTAGAGGGACCAGGAGG 1321
Score = 1360 bits (736), Expect = 0.0
Identities = 786/811 (97%), Gaps = 0/811 (0%)
Strand=Plus/Plus
Query 1007 GAGAACCATACACACGTGGAAGCCCTTCATATCCGTCACATGATGAGTTTGATCGCTATT 1066
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1390 GAGAATCATACACACGTGGAAGCCCTTCCCATCCGTCACATGATGAGTTTGATCGCTATC 1449
Query 1067 CCCGTGCACACTCTCTTCAAATGCCTTCATACGCTGGAGGCATGAACCACGAATTTGTTG 1126
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1450 CCCGTGCACACTCACTTCAAATGCCTTCATACGCTGGAGGCATGAACCACGATTTTGTTG 1509
Query 1127 ACTATATGTATCACAACAACCCGAGGGCAAGAGGTCAGGGCCAAGGAAGTAGGATCTCAG 1186
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1510 ACTATATGTATCACAACAACCCAAGGGCAAGAGGTCAGGGCCAAGGAAGTAGGATCTCAG 1569
Query 1187 GAGAGATGGGAAGAAACCATGGCGGTTGGTATTCAGGTCAGCTTCATAATTCTTACAGTT 1246
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 GTGAAATGGGAAGAAACCATGGCGGTTGGTATTCAGGTCAGCTTCATAATTCTTACAGTT 1629
Query 1247 CATATTCTGCAAGTCCACAGAGACCAATGGAACAACCTGAGTATCATCGGAGATGGAGGC 1306
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1630 CATATTCTGCAAGTCCACAGAGACCAATGGAACAACCTGAGTATCATCCGAGATGGAGGC 1689
Query 1307 GCGAGATAGTCTCGGACGTGGAGGATCATCATCGTAATAGACATGCTGGCCACCACCATG 1366
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1690 GTGAGATAGTCTCAGACGTGGAGGATCATCAGCGTAATAGACATGCTGGCCACCACCATG 1749
Query 1367 AGTTACAGACCCGTCGTCTAAAAGAGAGACAACGTGTGGCCAAGCGTCATGTCCGTCCAA 1426
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1750 AGTTACAGACCCGTCGTCTAAGAGAGAGACAACGTGTGGCCAAGCGTCATGTCCGTCCAA 1809
Query 1427 CAGCTGGTGGGGCACCTTTTGTTAGCTGTTACAGTTGCTCAGAAAACCTGCAGCTTCCTG 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 CAGCTGGTGGGGCACCTTTTGTTAGCTGTTACAGTTGCTCAGAAAACCTGCAGCTTCCTG 1869
Query 1487 TAGACTTTCTCATTTTCAAGAGGAAGCATCATCTTCTCAGATGCGGCACTTGCACCTCTG 1546
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1870 TAGACTTTCTCATTTTCAAGAGGAAACATCATCTTCTCAGATGCGGCACTTGCACCACTG 1929
Query 1547 TTCTCAGATTCTCACTTCAATCCAGAACTCATTTAGTTCCTGCAGTAACACATGACATAA 1606
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1930 TTCTCAGATTCTCACTTCAGTCCAGAAATCATTTAGTTCCTGCAGTAACACATGACATAA 1989
Query 1607 ATGCTAATAGGAATAGCAATTCAACATCAGAGTCTCCCAGAGACAAAGCTCCCTCCAAAC 1666
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1990 ATGCTAATAGGAATAGCAATTCAACATCAGAGTCTCCCATAGACAAAGCTCCCTCCAAAC 2049
Query 1667 CTGAAAAGCTGAGATCCTCTGTTCAGGATGAGGAGCTACCTGTGTCTAGAGGTTCTCCAC 1726
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 2050 CTGAAAAGCTGAGATCCTCTGTTCAGGATGAGGAGCTACCTGTGGCTAGAGGCTCTCCGC 2109
Query 1727 TTCACCGACTAATGGGATATTCTACTGTAAGCCAAGTCTTTAAAGCTTCACAGCGTCCTC 1786
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2110 TTCACCGACTAATGGGATATTCTACTGTAAGCCAAGTCTTTAAAGTTTCACAGCGTCCTC 2169
Query 1787 CTTCTGTATAGATCTCTGCTTCTGATGAAGC 1817
||||| |||||||||||||||| ||||||||
Sbjct 2170 CTTCTATATAGATCTCTGCTTCAGATGAAGC 2200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89909176095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5