BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940065
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06290.1 | Symbols: 2-Cys Prx B, 2CPB | 2-cysteine peroxired... 1153 0.0
AT3G11630.1 | Symbols: | Thioredoxin superfamily protein | chr... 713 0.0
> AT5G06290.1 | Symbols: 2-Cys Prx B, 2CPB | 2-cysteine peroxiredoxin
B | chr5:1919213-1921425 FORWARD LENGTH=1203
Length=1203
Score = 1153 bits (624), Expect = 0.0
Identities = 786/859 (92%), Gaps = 32/859 (4%)
Strand=Plus/Plus
Query 9 ACAGAGT-TATGTCAATGGCGTCTATAGcttcttcttccaccaccaccctta-tctcttc 66
||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 159 ACAGAGTCAATGTCAATGGCGTCTATAGCTTCTTCTTCTTCCACCACCC-TACTCTCTTC 217
Query 67 ctctagggttcttcttccctccaagtcttctcttATATCTCCCGCCGTGTCTTTCCCCAG 126
|||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 218 CTCTAGGGTTCTTCTTCCCTCCAAGTCTTCTCTTTTATCTCCTACCGTCTCTTTCCCCAG 277
Query 127 ----A-A--C-C-T--TC-GCATCA------TC-CTC--TTCCGGATTCTCTC-GTCTC- 163
| | | | | || |||||| || ||| |||||| ||||| | |||||
Sbjct 278 AATCATACCCTCTTCCTCGGCATCATCCTCTTCTCTCTGTTCCGGGTTCTC-CAGTCTCG 336
Query 164 GTTCCCCTAACCTCCAGA-CTCTCCGCCTCACGCCGGAGCTTCGTCGTCAAGGCACAGGC 222
||| |||| ||| ||| | | ||||||||||||||||| ||||| ||||||||| |||||
Sbjct 337 GTT-CCCTCACCACCA-ACCGCTCCGCCTCACGCCGGAACTTCGCCGTCAAGGCTCAGGC 394
Query 223 CGATGATTTACCACTGGTCGGTAATAAGGCGCCTGATTTTGAGGCAGAGGCAGTTTTTGA 282
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 395 TGATGATTTACCACTGGTCGGTAATAAGGCGCCTGATTTTGAAGCTGAGGCAGTTTTTGA 454
Query 283 TCAAGAGTTCATCAAGGTGAAGCTCTCTGAGTACATTGGGAAAAAGTATGTCATTCTATT 342
|||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 455 TCAAGAGTTCATAAAGGTGAAGCTCTCTGAGTACATTGGCAAAAAGTATGTTATTCTATT 514
Query 343 TTTCTACCCTTTGGACTTCACTTTTGTTTGCCCCACAGAGATTACTGCCTTCAGTGACCG 402
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 515 CTTCTACCCTTTGGACTTCACTTTTGTCTGCCCCACTGAGATTACTGCCTTCAGTGACCG 574
Query 403 CTATGAAGATTTTGAGAAGCTAAACACCGAAGTATTAGGGGTCTCAGTCGACAGTGTGTT 462
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 575 TTATGAAGAATTTGAGAAGCTAAACACCGAAGTATTAGGGGTCTCTGTCGACAGTGTGTT 634
Query 463 CTCGCATCTCGCGTGGGTCCAAACAGACAGAAAGTCAGGAGGGCTCGGTGATCTGAATTA 522
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 635 CTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCGGGAGGGCTCGGTGATCTGAATTA 694
Query 523 CCCACTTGTTTCGGATATCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGA 582
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TCCTCTTGTTTCGGATATCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGA 754
Query 583 CCAGGGCATTGCACTGAGAGGACTTTTCATCATCGACAAGGAAGGAGTCATTCAGCATTC 642
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 755 TCAGGGCATTGCACTGAGAGGGCTTTTCATCATAGACAAGGAAGGAGTCATTCAGCATTC 814
Query 643 CACCATCAACAACCTTGGTATTGGTCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGC 702
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 815 CACCATCAACAACCTCGGTATTGGCCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGC 874
Query 703 ATTACAATATGTTCAGGAAAACCCGGATGAAGTTTGCCCTGCGGGATGGAAGCCCGGGGA 762
|||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 875 ATTACAGTATGTTCAAGAAAACCCGGATGAAGTGTGCCCTGCGGGATGGAAGCCAGGGGA 934
Query 763 GAAATCAATGAAACCTGACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGAGGCT 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GAAATCAATGAAACCTGACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGAGGCT 994
Query 823 AAAACTGAACA-ATTGTTT 840
|| | |||||| || ||||
Sbjct 995 AAGATTGAACACAT-GTTT 1012
> AT3G11630.1 | Symbols: | Thioredoxin superfamily protein | chr3:3672120-3674075
FORWARD LENGTH=1008
Length=1008
Score = 713 bits (386), Expect = 0.0
Identities = 559/642 (87%), Gaps = 14/642 (2%)
Strand=Plus/Plus
Query 184 CTCCGCCTCACGCCGGAGCTTCGTC-GTCAAGGCACAGGCCGATGAT-TTACCACTGGTC 241
|||| | || || |||||||| | | ||||| || |||||||||||| || ||||||||
Sbjct 237 CTCCACTTCTCGTCGGAGCTTTG-CTGTCAAAGCCCAGGCCGATGATCTT-CCACTGGTT 294
Query 242 GGTAATAAGGCGCCTGATTTTGAGGCAGAGGCAGTTTTTGATCAAGAGTTCATCAAGGTG 301
|| || |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 295 GGAAACAAGGCGCCTGATTTTGAGGCAGAGGCTGTGTTTGATCAAGAGTTCATCAAGGTT 354
Query 302 AAGCTCTCTGAGTACATTGGGAAA-AAGTATGTCATTCTATTTTTCTACCCTTTGGACTT 360
||||||||||| |||||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 355 AAGCTCTCTGATTACATT-GGAAAGAAGTATGTGATTCTCTTTTTCTACCCATTGGACTT 413
Query 361 CACTTTTGTTTGCCCCACAGAGATTACTGCCTTCAGTGACC-GCTATGAAGATTTTGAGA 419
||||| || ||||| ||||||||||||||||||||||||| || || ||| |||||||
Sbjct 414 TACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGC-ATTCAGAATTTGAGA 472
Query 420 AGCTAAACACCGAAGTATTAGGGGTCTCAGTCGACAGTGTGTTCTCGCATCTCGCGTGGG 479
|| | ||||||||||||||||| || || ||||| ||||||||||| || || || ||||
Sbjct 473 AGTTGAACACCGAAGTATTAGGTGTTTCTGTCGATAGTGTGTTCTCTCACCTTGCATGGG 532
Query 480 TCCAAACAGACA-GAAAGTCAGGAGGGCTCGGTGATCTGAATTA-CCCACTTGTTTCGGA 537
|||||||||||| |||| || |||||||| ||||||||||| || ||| ||| |||| ||
Sbjct 533 TCCAAACAGACAGGAAA-TCTGGAGGGCTTGGTGATCTGAACTATCCC-CTTATTTCAGA 590
Query 538 TATCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGACCAGGGCATTGCACT 597
| |||||||||| || ||||| ||||| ||||||||||||| ||| ||||| || |||||
Sbjct 591 TGTCACTAAATCAATCTCAAAGTCGTTCGGAGTGCTCATCCATGATCAGGGAATAGCACT 650
Query 598 GAGAGGACTTTTCATCATCGACAAGGAAGGAGTCATTCAGCATTCCACCATCAACAACCT 657
||||||||||||||| ||||||||||||||||| || || ||||||||||||||||| ||
Sbjct 651 GAGAGGACTTTTCATAATCGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAATCT 710
Query 658 TGGTATTGGTCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGCATTACAATATGTTCA 717
||||||||| ||||| ||||||||||||||||||||||||||||||||||| || | ||
Sbjct 711 TGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACATCCA 770
Query 718 GGAAAACCCGGATGAAGTTTGCCCTGCGGGATGGAAGCCCGGG-GAGAAATCAATGAAAC 776
|||||||||||||||||| ||||| || ||||||||||| ||| ||||| ||||||||||
Sbjct 771 GGAAAACCCGGATGAAGTCTGCCCAGCAGGATGGAAGCC-GGGTGAGAAGTCAATGAAAC 829
Query 777 CTGACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGA 818
| ||||| || ||||||||||| ||||| |||||||| ||||
Sbjct 830 CCGACCCAAAACTCAGCAAAGAGTACTTCTCAGCTATTTAGA 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5