BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940069
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06320.1 | Symbols: NHL3 | NDR1/HIN1-like 3 | chr5:1930793-1... 1208 0.0
AT3G11650.1 | Symbols: NHL2 | NDR1/HIN1-like 2 | chr3:3676146-3... 296 2e-79
> AT5G06320.1 | Symbols: NHL3 | NDR1/HIN1-like 3 | chr5:1930793-1931768
REVERSE LENGTH=976
Length=976
Score = 1208 bits (654), Expect = 0.0
Identities = 710/737 (96%), Gaps = 3/737 (0%)
Strand=Plus/Plus
Query 1 TGAGGCATTTTAACGAACACATGGCGGACTTAAACGGTGCGTATTACGGACCATCGATTC 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 38 TGAGGCATTTTAACGAACAGATGGCGGACTTAAACGGTGCGTATTACGGACCATCGATTC 97
Query 61 CACCGCCGAAGAAAGTCTCTCACAGCCACGGCAGACGCGGCGGTGGATGCGGTTGTTTAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 CACCGCCGAAGAAAGTCTCTCACAGCCACGGCAGACGCGGCGGTGGATGCGGTTGTTTAG 157
Query 121 GTGACTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 GTGACTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAA 217
Query 181 CCATAGCCGTCTTACTAGGCATAGCTGCTTTGATCATCTGGCTCATTTTCCGACCCAACG 240
|||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||
Sbjct 218 CCATAGCCGTCTTATTAGGCATAGCTGCTCTAATCATCTGGCTCATTTTCAGACCCAACG 277
Query 241 CTATCAAATTCCACGTCACCGATGCTAAGCTCACCGAATTCACACTCGACCCAACCAACA 300
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 278 CTATCAAATTCCACGTCACCGACGCTAAACTCACCGAATTCACACTCGACCCAACCAACA 337
Query 301 ACCTCCGATACAATCTCGACCTCAATTTCACAATCCGTAACCCTAATCGACGGATCGGTG 360
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 338 ACCTCCGATACAATCTCGATCTCAATTTCACAATCCGTAACCCTAACCGCCGGATCGGTG 397
Query 361 TTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGCATGAGTA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 398 TTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGTATGAGTA 457
Query 421 ACAACATCTCGAAGTTTTACCAGGGACATAAGAACACGACAGTGGTTGGAACTAAACTC- 479
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 458 ACAACATCTCGAAGTTTTACCAGGGACATAAGAACACGACGGTGGTTGGAACTAAACTCG 517
Query 480 TCCGGACAGCAATTGGTGATGCTTGACGGCGGAGAGAGGAAGGATCTGAACGAGGATGTG 539
| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 518 TG-GGACAGCAATTGGTGCTGCTTGACGGCGGAGAGAGGAAGGATTTGAACGAGGATGTG 576
Query 540 AATTCTCAGATCTATAGGATCGATGCGAAGCTTAGACTTAGGATTAGGTTTAAGTTTGGG 599
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 577 AATTCTCAGATCTATAGGATCGATGCCAAGCTGAGACTTAAGATTAGGTTTAAGTTTGGG 636
Query 600 TTGATCAAGTCGTGGAGGTTCAAGCCAAAGGTCAAGTGTGATCTCAAGGTTCCTCTTACC 659
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 637 TTGATCAAGTCGTGGAGGTTCAAGCCCAAGATCAAGTGCGATCTCAAGGTTCCTCTTACC 696
Query 660 TCTAATTCAACCAGCGGGTTTGTGTTTCAGCCGACCAAGTGTGACGTTGACTTTTGATA- 718
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 697 TCTAATTCAACCAGCGGGTTTGTTTTTCAGCCGACCAAGTGTGACGTTGACTTTTGATTG 756
Query 719 CTAGTCAAAAGTCAATG 735
|||||||| ||||||||
Sbjct 757 CTAGTCAAGAGTCAATG 773
> AT3G11650.1 | Symbols: NHL2 | NDR1/HIN1-like 2 | chr3:3676146-3677037
REVERSE LENGTH=892
Length=892
Score = 296 bits (160), Expect = 2e-79
Identities = 466/609 (77%), Gaps = 39/609 (6%)
Strand=Plus/Plus
Query 125 CTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAACCAT 184
|||||| | |||||||| ||||| ||||||||| | |||| ||||||||||||| | |
Sbjct 177 CTGTCTACGTTGCTGCGGTTGCTGCATCTTAAGCCTGATCTGCAACATCCTCATAGCTGT 236
Query 185 AGCCGTCTTACTAGGCA-TAGCTGCT-TTGATCATCTGGCTCATTTTCCGACCCAACGCT 242
|||||| | || || | | || ||| || ||| |||||||||| ||||| || |||||
Sbjct 237 AGCCGTAATCCTCGG-AGTCGCCGCTCTT-ATCCTCTGGCTCATCTTCCGTCCAAACGCC 294
Query 243 ATCAAATTCCACGTCACCGATGCTAAGCT-CACCGAATTCACAC-TCGACCCAACCAACA 300
|||||||| ||||| |||| ||||| || |||| ||||| | |||| |||| |||||
Sbjct 295 GTCAAATTCTACGTCGCCGACGCTAATCTGAACCG-ATTCA-GCTTCGATCCAAACAACA 352
Query 301 ACCTCCGA-TACAATCTCGACCTCAATTTCACAATCCGTAACCCTAATCGACG-GATCGG 358
|||||| | |||| |||||| |||||||||||||||||||||||||||| ||| | ||||
Sbjct 353 ACCTCC-ATTACAGTCTCGATCTCAATTTCACAATCCGTAACCCTAATCAACGAG-TCGG 410
Query 359 TGTTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGCATGAG 418
|| ||||| ||||| || || || || || ||||| |||||| ||||||| || |
Sbjct 411 AGTCTACTACGATGAGTTCTCGGTTAGTGGCTATTACGGAGATCAGAGATTCGG-ATCTG 469
Query 419 TAACAACATCTCGAAGTTTTACCA-GGGACATAAGAACACGACAGTGGTTGGAACTAAAC 477
| | | | ||| |||||| || ||| |||||||| ||||| ||| || ||| |||
Sbjct 470 CGA-A-CGTTTCGTCGTTTTATCAAGGG-CATAAGAATACGACGGTGATTTTAACCAAAA 526
Query 478 TCTCC-GGACAGCAAT-TGGTGATGCTTGACGGCGGAGAGAGGA-AGGATCTGAACGAGG 534
| | |||||| ||| ||||| |||| | || ||||| ||| | || |||| || || |
Sbjct 527 T-TGAAGGACAG-AATCTGGTGGTGCTCGGCGACGGAGCGAGAACAG-ATCTAAAAGATG 583
Query 535 ATGTGAATTCTCAGATCTATAGGATCGATGCGAAGCTT-AGACTTAG-GATTAGGTTTAA 592
||| ||| ||| ||| ||| |||| ||||||| || || || || | ||||||||||
Sbjct 584 ATGAGAAATCTGGGATTTATCGGATTAATGCGAAA-TTGAGGCTAAGTG-TTAGGTTTAA 641
Query 593 GTTTGGGTTGATCAAGTCGTGGAGG-TTCAAGCCAAAGGTCAAGTGTGATC-TC--AAGG 648
|||| |||| || |||||||||| | || || |||||| | ||||||||| || |||
Sbjct 642 GTTTTGGTTTATAAAGTCGTGGAAGCTTAAA-CCAAAGATTAAGTGTGATGATCTTAAGA 700
Query 649 TTCCTCTTA---CCTCTAATTCAACCAGC-GGGTTTGTGTTTCAGCCGAC-CAAGTGTGA 703
|||||||| |||||||||| || || |||||| |||||| ||| || ||||||
Sbjct 701 TTCCTCTTGGTTCCTCTAATTCTAC-AGGAGGGTTTAAGTTTCAACCGGTGCA-GTGTGA 758
Query 704 CGTTGACTT 712
| |||||||
Sbjct 759 CTTTGACTT 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35716478517
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5