BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940071
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 802 0.0
AT5G05657.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 394 6e-109
AT3G11660.1 | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3678835-3... 381 5e-105
AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 226 2e-58
> AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr5:1934739-1935644
REVERSE LENGTH=906
Length=906
Score = 802 bits (434), Expect = 0.0
Identities = 563/622 (91%), Gaps = 21/622 (3%)
Strand=Plus/Plus
Query 1 CACCGTCACCGGAGCTCCGACATGACCTCAAAAGACTGTGGCGCTCACCACAGCCACTCA 60
|||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 45 CACCGTCACCGGAGCT-----ATGACCTCAAAAGACTGTGGCTCTCACGACAGCCACTCA 99
Query 61 TCCTCATGCAACCGTAAAATCATCCGCCGTGTAATCTGGCCAATAAT-AATAATCCTCTT 119
||||||||||||||||| | ||| |||||| | || || |||||||||| |
Sbjct 100 ---TCATGCAACCGTAAAAT-A------GTG--ATCTGGACGAT-ATCAATAATCCTCCT 146
Query 120 CATAATCCTTCTCATAATTCTCCTAGTTTGGGCAATCCTTCAACCATCAAAACCACGCTT 179
| |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 147 CTTAATCCTTGTCGTAATTCTCCTAGTTTGGGCAATCCTTCAACCATCGAAACCACGCTT 206
Query 180 CATCCTCCAAGACGCCACCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCT 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 CGTCCTCCAAGACGCCACCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCT 266
Query 240 CACCTCAAATTTCCAAATCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGAATCTA 299
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 267 CACCTCAAATTTCCAATTCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGTATCTA 326
Query 300 CTACGACCGTCTTGACGTCTACGCTTCTTACCGGAGCCAACAAATCACTTTTCCGACTTC 359
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |
Sbjct 327 CTACGACCGTCTTGACGTCTACGCTTCTTACCGGAGCCAACAGATCACTTTGCCGAGTCC 386
Query 360 GATGCCTACGACTTATCAAGGACACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCGGTGG 419
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CATGCTTACCACTTATCAAGGACACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCGGTGG 446
Query 420 ATACTCTGTCCCCGTAGCTCCTTACAACGCCTTGTATCTCGATCAGGACCATACACGTGG 479
|||||| || || || ||||| |||||||| || |||||||||||||||||| || ||||
Sbjct 447 ATACTCCGTTCCTGTGGCTCCGTACAACGCTTTCTATCTCGATCAGGACCATTCAAGTGG 506
Query 480 CACGATCATGTTGGTGCTTCATCTTGACGG-CAGAGTTCGTTGGAAAGTCGGTTCCTTCA 538
| ||||||||||| |||||||||| ||||| | ||||||||||||||||||| |||||||
Sbjct 507 CGCGATCATGTTGATGCTTCATCTCGACGGTC-GAGTTCGTTGGAAAGTCGGATCCTTCA 565
Query 539 TCACCGGAAAATATCATCTCCACGTTAGATGTCCGGCGTTTATCAACTTTGGGAATAGTG 598
||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||
Sbjct 566 TCACCGGAAAATATCATCTCCACGTTAGATGTCATGCGCTTATCAACTTCGGGAGTAGTG 625
Query 599 CTTCCGGAGTTATCGTCGGAAA 620
|| |||||||||||||||||||
Sbjct 626 CTGCCGGAGTTATCGTCGGAAA 647
> AT5G05657.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family (TAIR:AT5G06330.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1688990-1689571
FORWARD LENGTH=582
Length=582
Score = 394 bits (213), Expect = 6e-109
Identities = 473/591 (80%), Gaps = 48/591 (8%)
Strand=Plus/Plus
Query 109 ATAATCCTCTTCAT-A-AT-CCTTCTCATAATTCTCC--TAGTTTGGGCAATCCTTCAAC 163
|||||| | ||||| | || | |||||||||| |||| ||| ||| |||||||||| ||
Sbjct 7 ATAATCATGTTCATCATATGCATTCTCATAATCCTCCTATAGATTGTGCAATCCTTCTAC 66
Query 164 CATCAAAACCACGCTTCATCCTCCAAGACGCCACCGTCTTCAACTTCAACGTCTCCGGCA 223
|||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 67 CATCAAAACCACGCTTTATCTTCCAAGACGTCACCGTCTTCAACTTCAACGTCTCCGGCA 126
Query 224 ATCCACCGAACCTCCTCACCTCAA-ATTTCCAAATCACTCTCTCCTCTCGTAACCCTAAC 282
||||| || ||||| |||| || | | |||| ||| |||||||| |||||||||||||
Sbjct 127 ATCCATCGGACCTCAACACCCCAGTAGT-CCAATTCAATCTCTCCTTTCGTAACCCTAAC 185
Query 283 GACAAGATCGGAATCTACTACGAC-CGTCTTGACGTCTACGCTTCTTAC-----CGG-AG 335
| ||| ||| |||||||||||||| | |||||||||||||||| |||| ||| ||
Sbjct 186 GCCAATATCCGAATCTACTACGACACC-CTTGACGTCTACGCTTTTTACGGGAACGGGAG 244
Query 336 CCAACAAATCACTTTTCC-GACTTCGATGCCTACGACTTATCAAGGACACAAAGAAGTCA 394
|||||| |||| || ||| |||| | |||||| |||||||||||||||||||||||| ||
Sbjct 245 CCAACAGATCA-TTATCCCGACTCCTATGCCTTCGACTTATCAAGGACACAAAGAAGACA 303
Query 395 ACGTTTGGTCTCCTTTCGTCGGTGGATACTCTGTCCCCGTAGCTCCTTACAACGCCTTGT 454
|||||||||||||| | || | | ||| || | ||| ||||||||||||
Sbjct 304 GCGTTTGGTCTCCTTACATCC-------C-C-GTC---GTT-C-CCT-ACAACGCCTTGT 348
Query 455 ATCT---CGATCAGGACCA-TACACGTGGCACGATCATGTTGGTGCTTCATCTTGACGGC 510
|||| ||||||| |||| | |||||| | || ||||||| ||||||| || ||||||
Sbjct 349 ATCTTGACGATCAGCACCACT-CACGTGACGGGAACATGTTGATGCTTCACCTCGACGGC 407
Query 511 AGAGTTCGTTGGA-A--AGTCGGTTCCTT-CATC---ACCGGAAAAT-ATCATCTCCACG 562
||| || ||||| | | ||||| || | || ||| | | | ||||| ||||
Sbjct 408 AGAATTAGTTGGTTACTACTCGGTAACTAACCTCGGCACCC-ATTACCACCATCTTCACG 466
Query 563 TTAGATGTCCGGCGTTTATCAACTTTGGGAATAGTGCTTCCGGAGTTATCGTCGGAAATA 622
|||||||||| || |||||| ||||||||| ||||||| || ||||||||| ||||||||
Sbjct 467 TTAGATGTCCAGCCTTTATCGACTTTGGGAGTAGTGCTGCCAGAGTTATCGGCGGAAATA 526
Query 623 ACGCCGTTAAGTACACGCTCACCACAACTTGTAGTGTTAGCGTCTGAAAAG 673
|| |||||||||||||||||| || |||||| |||||||| || ||||||
Sbjct 527 ACACCGTTAAGTACACGCTCAACAAAACTTGCAGTGTTAGTGT--GAAAAG 575
> AT3G11660.1 | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3678835-3679943
REVERSE LENGTH=1109
Length=1109
Score = 381 bits (206), Expect = 5e-105
Identities = 464/587 (79%), Gaps = 24/587 (4%)
Strand=Plus/Plus
Query 97 TGGCCAATAATAATAATCCTCTTCATAATCCTT-CTCATAATTCTCCT-AGTTTGGGCAA 154
||| ||||||| | |||||||||| || ||| || | ||| ||||| | |||||||||
Sbjct 341 TGGTCAATAATCTTCGTCCTCTTCATCAT-CTTCCTAACAATCCTCCTCA-TTTGGGCAA 398
Query 155 TCCTTCAACCATCAAAACCACGCTTCATCCTCCAAGACGCCACCGTCTTCAACTTCAACG 214
| || ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 399 TTCTCCAACCATCAAAGCCACGCTTCATCCTCCAAGACGCCACCGTCTACGCCTTCAACG 458
Query 215 TCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTCCAAATCACTCTCTCCTCTCGTA 274
||||||||||||||||||||||||||||||| || ||||||||||||||||| || || |
Sbjct 459 TCTCCGGCAATCCACCGAACCTCCTCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGA 518
Query 275 ACCCTAACGACAAGATCGGAATCTACTACGACCGTCTTGACGTCTACGCTTCTTACCGGA 334
|||||||| |||| ||||| || ||||||||||| ||||||||||||||| |||||||||
Sbjct 519 ACCCTAACAACAAAATCGGCATTTACTACGACCGGCTTGACGTCTACGCTACTTACCGGA 578
Query 335 GCCAACAAATCACTTTTCCGACTTCGATGCCTACGACTTATCAAGGACACAAAGAAGTCA 394
|||||||||||||||| || || || || ||| | || ||||| ||||||||||| |||
Sbjct 579 GCCAACAAATCACTTTCCCAACATCAATCCCTCCCACGTATCAGGGACACAAAGATGTCG 638
Query 395 ACGTTTGGTCTCC-TTTCGTCGGTGGATAC-TCTGTCCCCGTAGCTCCTTACAACGCCTT 452
|| | ||||| || ||| || ||| || || || ||| | ||||||| |||| | |
Sbjct 639 ACATCTGGTCGCCGTTT-GTTTACGGA-ACCTCCGTTCCCATCGCTCCTTTTAACGGCGT 696
Query 453 GTA-TCTCGATCAG-GACCAT-ACA-CG-TGGCACGATCATGTTGGTGC-TTCAT-CTTG 505
|| ||| || || || | | | || || | | | ||||| | | ||| | || |
Sbjct 697 -TAGTCTTGA-CACCGATAAAGATAACGGTGTC--GTTT-TGTTGAT-CATTCGTGCT-G 749
Query 506 ACGGCAGAGTTCGTTGGAAAGTCGGTTCCTTCATCACCGGAAAATATCATCTCCACGTTA 565
| || ||||| | ||||| || || | || |||||||| || |||||||| || || |
Sbjct 750 ATGGTAGAGTGAGGTGGAAGGTTGGGACTTTTATCACCGGGAAGTATCATCTTCATGTGA 809
Query 566 -GATGTCCGGCGTTTATCAACTTTGGGAATAGTGCTTCCGGAGTTATCGTCGGAAATAAC 624
| ||||| || | ||| ||||| || || | ||| |||||||||||||||| | |||
Sbjct 810 AG-TGTCCAGCATATATAAACTTCGGTAACAAAGCTAACGGAGTTATCGTCGGAGACAAC 868
Query 625 GCCGTTAAGTACACGCTCACCACAACTTGTAGTGTTAGCGTCTGAAA 671
||||||||||| ||| | ||||| | |||||||||||| || |||||
Sbjct 869 GCCGTTAAGTATACGTTTACCACTAGTTGTAGTGTTAGTGTGTGAAA 915
> AT3G52470.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:19450649-19451982
FORWARD LENGTH=970
Length=970
Score = 226 bits (122), Expect = 2e-58
Identities = 390/515 (76%), Gaps = 36/515 (7%)
Strand=Plus/Plus
Query 140 TCCTAGTTTGGG-CAATCCTTCA--ACCATCAAAACCACGCTTCATCCTCCAAGACGCCA 196
|||||||||||| | || | ||| ||| | |||||| | ||| |||||||||||||||
Sbjct 205 TCCTAGTTTGGGTC-ATAC-TCAGGCCCA-CTAAACCAAGATTCGTCCTCCAAGACGCCA 261
Query 197 CCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTCCAAA 256
|||||| | ||||||| ||| | |||| ||| |||||||| || ||||| ||||||
Sbjct 262 CCGTCTACGCCTTCAACCTCT-C-GCAA-CCA---AACCTCCTTACTTCAAACTTCCAAG 315
Query 257 TCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGAATCTACTACGACCGTCTTGACG 316
|||| || | ||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 316 TCACAATCGCATCTCGTAACCCTAACTCCAAGATCGGAATCTACTACGACCGTCTCCACG 375
Query 317 TCTACGCTTCTTACCGGAGCCAACAAATCACTTTTCCG-ACTTCGATGCCTACGACTTAT 375
|||||||| | ||| || ||| || ||||| | | || || |||| ||| |||| |||
Sbjct 376 TCTACGCTACATACATGAACCAGCAGATCAC-TCTACGTACGGCGATTCCTCCGACGTAT 434
Query 376 CAAGGACACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCGGTGGATACT-CTGTCCCCGT 434
||||| ||||||||||||||||||||||||||||||||| || ||| | || ||| |
Sbjct 435 CAAGGCCACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCTACGGG-ACTGCGGTTCCCAT 493
Query 435 AGCTCCTTACAACGCCTT-G-TATCTCG-ATCAGGACCATACA-CGTGGCAC--GATCAT 488
|| ||||||||| || | | | | | | | |||| | | | ||||| | | | |
Sbjct 494 CGCACCTTACAACTCCGTCGCT-T-TGGGAG-AGGAGAA-AGATCGTGG-ATTTG-T-AG 546
Query 489 G-TTGGTGCTTCAT-CTTGACGGCAGAGTTCGTTGGAAAGTC-GGTTCCTTCATCACCGG 545
| ||| || | | | || || | || | |||||||| || | || ||||||||
Sbjct 547 GGTTGATGATACGCGCC-GATGGGACCGTGAGGTGGAAAGTGAGGA-CTTTGATCACCGG 604
Query 546 AAAATATCATCTCCACGTTAGATGTCCGGCGTTTATCAA-CTTTGGGAATAGTGCTTCCG 604
|||||||||| |||| ||| | |||| |||||| ||||| ||| || || | ||| | |
Sbjct 605 AAAATATCATATCCATGTTCGGTGTCAGGCGTTCATCAATCTT-GGAAACAAAGCTGCTG 663
Query 605 GAGTTATCGTCGGAAATAACGCCGTTAAGTACACG 639
| ||| | ||||| ||||||||||||||||||||
Sbjct 664 GTGTTCTTGTCGGTGATAACGCCGTTAAGTACACG 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5