BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940266 Length=1082 Score E Sequences producing significant alignments: (Bits) Value AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B |... 859 0.0 AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-li... 228 1e-58 AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A ... 202 6e-51 > AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | chr5:2572107-2574879 FORWARD LENGTH=1815 Length=1815 Score = 859 bits (465), Expect = 0.0 Identities = 555/596 (93%), Gaps = 16/596 (3%) Strand=Plus/Plus Query 503 ATTTTCAAGAAGCTACAAAGTTGAAATCTTGGTATGATGCTGAAGGGAAAGAGACATCTA 562 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157 ATTCTCCAGAAGCTACAAAGTTGAAATCTTGGTATGATGCTGAAGGGAAAGAGACATCTA 1216 Query 563 TGTCTGCTATTGGCTCTGGAATGGGTTCTTCTGCCAACAATGGATCAAGATCCATGTATT 622 ||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||| Sbjct 1217 TGTCTGCTATTGGTTCTGGGATGAGTTCTTCTGCCAACAACGGATCAAGATCCATGTATT 1276 Query 623 CTGACAGAGTTTTTCTCTCTCACATCACAAGCAACCCCTCTTTAGGTGAGGAGAAGCCTG 682 |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1277 CTGACAGAGTTTTTCTTTCTCACATCACAAGCAATCCCTCTTTAGGCGAGGAGAAGCCTG 1336 Query 683 TATTCTTTAGTACTAGAGCTTACATAAGCTTCATCAAGCCAGACCAGACAATGTGGTACC 742 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1337 TATTCTTCAGCACTAGAGCTTACATAAGCTTCATCAAGCCAGACCAAACAATGTGGTACC 1396 Query 743 GTGCTTGCAAGACCTGTAACAAGAAAGTGACTGAAGCAATGGACTCTGGTTATTGGTGTG 802 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1397 GTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGGACTCTGGTTATTGGTGTG 1456 Query 803 AAGGTTGTCTGAAAAAGGATCAAGAATGCAGCTTAAGGTATATAATGGCGGTGAAAGTCT 862 || |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1457 AAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGGTATATAATGGCGGTGAAAGTCT 1516 Query 863 CTGATTCAACAGGTGAAACTTGGTTTTCTGCATTCAATGATGAAGCAGAGAAGATTATTG 922 | || ||||| |||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1517 CCGACTCAACTGGTGAAACTTGGTTATCTGCATTCAATGATGAAGCAGAGAAGATTATCG 1576 Query 923 GCTGCACAGCTGATGAACTCAATAATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 982 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1577 GCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 1636 Query 983 AGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGT-------A-- 1033 |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1637 AGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGTGTTTCTCAGC 1696 Query 1034 -----TA-A-CAGTAAGAAGAGACAGAGGATAACTGTAAGAGGTGTTTCTCCAATT 1082 || | |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1697 AAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAGGTGTTTCTCCAATT 1752 Score = 252 bits (136), Expect = 6e-66 Identities = 155/164 (95%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 349 GATGATCAC-AAGAGGGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTC 407 ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 GATGATCCCAAAGAGAGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTC 1004 Query 408 CCTTTGGAATGATCTAGCAACTGGCATAGGCCATGAACTGCTAGACATGGCTGATAATCA 467 ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct 1005 CCTTTGGAATGATCTAGCAACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAATCA 1064 Query 468 CCCTGTTATCGCGATTAAGTCTCTCAAAGTTGGAGATTTTCAAG 511 |||||||||||||||||| ||||| |||||||||| |||||||| Sbjct 1065 CCCTGTTATCGCGATTAAATCTCTTAAAGTTGGAGCTTTTCAAG 1108 > AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr3:5047400-5049877 FORWARD LENGTH=1545 Length=1545 Score = 228 bits (123), Expect = 1e-58 Identities = 137/144 (95%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 206 TGGTAAACAAACAAGACTCCAATGGACGACTTAACGCAGCTATCTGTTGTGCTCCTGCGT 265 |||| || ||||||||||| |||| ||||||||||||||||| |||||||||||||| | Sbjct 385 TGGTCAAGAAACAAGACTCTGATGGCCGACTTAACGCAGCTATATGTTGTGCTCCTGCCT 444 Query 266 TGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAGCAACGGGTTACCCTGTTTTTA 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 TGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAGCAACGGGTTACCCTGTTTTTA 504 Query 326 TGGAGAAACTTGCGGCTACTTGTG 349 |||||||||||||||||||||||| Sbjct 505 TGGAGAAACTTGCGGCTACTTGTG 528 > AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A protein 1-related | chr5:24549578-24552723 REVERSE LENGTH=2076 Length=2076 Score = 202 bits (109), Expect = 6e-51 Identities = 148/166 (89%), Gaps = 5/166 (3%) Strand=Plus/Plus Query 349 GATGA-TCAC-AAGAGGGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGT 406 ||||| || | ||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1099 GATGATTC-CTAAGAGGGATATAACTTTGGCTGATGAGTCAAGGAAAACTGTTGTGGTGT 1157 Query 407 CCCTTTGGAATGATCTAGCAACTGGCATAGGCCATGAACTGCTAGACATGGCTGAT-AAT 465 |||| ||||||||||| |||||||||||||| || || || ||||||||||||||| | | Sbjct 1158 CCCTGTGGAATGATCTTGCAACTGGCATAGGTCAGGAGCTACTAGACATGGCTGATCAGT 1217 Query 466 CACCCTGTTATCGCGATTAAGTCTCTCAAAGTTGGAGATTTTCAAG 511 || ||||| || || || |||||||||||||||||||||||||||| Sbjct 1218 CA-CCTGTGATTGCAATCAAGTCTCTCAAAGTTGGAGATTTTCAAG 1262 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53011775520 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5