BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940290

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor, thioredoxin...   765    0.0  


> AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor, thioredoxin-like 
U5 snRNP | chr5:2665976-2667155 FORWARD LENGTH=715
Length=715

 Score =  765 bits (414),  Expect = 0.0
 Identities = 452/471 (96%), Gaps = 0/471 (0%)
 Strand=Plus/Plus

Query  9    gagagagagagagagagagagGATGTCGTATCTTCTGCCGCATCTGCACTCCGGTTGGGC  68
            ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct  46   GAGAGAGAGAGAGAGAGAGAGAATGTCGTATCTTCTTCCACATCTGCACTCCGGTTGGGC  105

Query  69   TGTTGATCAGGCGATTCTGGCTGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGA  128
            |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  106  TGTTGATCAGTCGATTCTGGCCGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGA  165

Query  129  CTGGGATGAGACTTGTATGCAGATGGATGAGGTGCTTTCCTCTGTTGCTGAGACGATAAA  188
            |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct  166  CTGGGATGAGACCTGTATGCAGATGGATGAGGTGCTTGCGTCTGTTGCTGAGACGATTAA  225

Query  189  GAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTGCCAGACTTCAACACCATGTA  248
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  226  GAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTTCCAGACTTCAACACCATGTA  285

Query  249  CGAGCTGTACGATCCTTCCACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGA  308
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  286  CGAGCTGTACGATCCTTCTACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGA  345

Query  309  TCTTGGTACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCAT  368
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  TCTTGGAACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCAT  405

Query  369  CGATATCATCGAGACCGTCTACCGCGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCC  428
             |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  406  TGATATCATTGAGACTGTCTACCGTGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCC  465

Query  429  AAAAGATTACTCCACCAAATACCGCTACTAACCGGGCTTCCCAACACTATC  479
            |||||||||||||||||||||||| |||||| || ||||||||||||||||
Sbjct  466  AAAAGATTACTCCACCAAATACCGTTACTAATCGAGCTTCCCAACACTATC  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22806302738


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5