BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940290 Length=479 Score E Sequences producing significant alignments: (Bits) Value AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor, thioredoxin... 765 0.0 > AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor, thioredoxin-like U5 snRNP | chr5:2665976-2667155 FORWARD LENGTH=715 Length=715 Score = 765 bits (414), Expect = 0.0 Identities = 452/471 (96%), Gaps = 0/471 (0%) Strand=Plus/Plus Query 9 gagagagagagagagagagagGATGTCGTATCTTCTGCCGCATCTGCACTCCGGTTGGGC 68 ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 46 GAGAGAGAGAGAGAGAGAGAGAATGTCGTATCTTCTTCCACATCTGCACTCCGGTTGGGC 105 Query 69 TGTTGATCAGGCGATTCTGGCTGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGA 128 |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 106 TGTTGATCAGTCGATTCTGGCCGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGA 165 Query 129 CTGGGATGAGACTTGTATGCAGATGGATGAGGTGCTTTCCTCTGTTGCTGAGACGATAAA 188 |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| || Sbjct 166 CTGGGATGAGACCTGTATGCAGATGGATGAGGTGCTTGCGTCTGTTGCTGAGACGATTAA 225 Query 189 GAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTGCCAGACTTCAACACCATGTA 248 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 226 GAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTTCCAGACTTCAACACCATGTA 285 Query 249 CGAGCTGTACGATCCTTCCACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGA 308 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 286 CGAGCTGTACGATCCTTCTACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGA 345 Query 309 TCTTGGTACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCAT 368 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 TCTTGGAACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCAT 405 Query 369 CGATATCATCGAGACCGTCTACCGCGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCC 428 |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 406 TGATATCATTGAGACTGTCTACCGTGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCC 465 Query 429 AAAAGATTACTCCACCAAATACCGCTACTAACCGGGCTTCCCAACACTATC 479 |||||||||||||||||||||||| |||||| || |||||||||||||||| Sbjct 466 AAAAGATTACTCCACCAAATACCGTTACTAATCGAGCTTCCCAACACTATC 516 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22806302738 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5