BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940352
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08590.1 | Symbols: ASK2, SNRK2-1, SNRK2.1, SRK2G | SNF1-rel... 1762 0.0
AT5G63650.1 | Symbols: SNRK2-5, SNRK2.5, SRK2H | SNF1-related p... 1074 0.0
> AT5G08590.1 | Symbols: ASK2, SNRK2-1, SNRK2.1, SRK2G | SNF1-related
protein kinase 2.1 | chr5:2783331-2786094 FORWARD LENGTH=1493
Length=1493
Score = 1762 bits (954), Expect = 0.0
Identities = 1053/1100 (96%), Gaps = 9/1100 (1%)
Strand=Plus/Plus
Query 2 TACGGTTGTTGATTTGG-AA-ATGGACAAGTATGATGTTGTCAAGGATCTGGGAGCTGGG 59
||||| | ||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 187 TACGG-TATTGATTTGGAAATATGGACAAGTATGACGTTGTCAAGGATCTGGGAGCTGGA 245
Query 60 AATTTCGGTGTGGCTCGCCTTCTTAGGCACAAGGACACTAAAGAGCTTGTTGCCATGAAA 119
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 246 AATTTCGGTGTGGCTCGCCTTCTCAGGCACAAGGACACCAAAGAGCTTGTTGCCATGAAA 305
Query 120 TACATCGAGAGAGGCCGCAAGATAGATGAGAACGTGGCGAGAGAGATCATCAACCACAGA 179
|||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct 306 TACATCGAGAGAGGTCGCAAGATAGATGAGAACGTGGCGAGAGAGATTATTAATCACAGA 365
Query 180 TCACTTAAGCATCCTAATATCATCCGGTTCAAGGAGGTGATTCTGACACCTACTCATCTT 239
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 366 TCACTTAAACATCCTAATATCATCCGGTTCAAGGAGGTGATCCTGACACCTACTCATCTT 425
Query 240 GCTATTGTGATGGAGTATGCTTCTGGAGGAGAGCTCTTTGATCGAATCTGTACTGCCGGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GCTATTGTGATGGAGTATGCTTCTGGAGGAGAGCTCTTTGATCGAATCTGTACTGCCGGT 485
Query 300 AGATTTAGTGAAGCTGAGGCTAGGTACTTCTTTCAACAGCTGATTTGTGGTGTTGACTAC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 486 AGATTTAGTGAAGCTGAGGCTAGGTACTTCTTTCAACAGCTGATTTGTGGTGTTGATTAC 545
Query 360 TGCCATTCCTTGCAAATATGTCATAGAGACCTGAAGCTTGAGAACACACTGCTCGATGGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TGCCATTCCTTGCAAATATGTCATAGAGACCTGAAGCTTGAGAACACACTGCTCGATGGG 605
Query 420 AGCCCTGCTCCGCTTTTGAAAATCTGTGATTTTGGTTACTCTAAGTCATCTATACTACAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AGCCCTGCTCCGCTTTTGAAAATCTGTGATTTTGGTTACTCTAAGTCATCTATACTACAT 665
Query 480 TCTAGGCCTAAATCGACTGTTGGAACTCCAGCATACATAGCACCTGAAGTTCTTTCACGG 539
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 666 TCTAGGCCTAAATCAACTGTTGGAACTCCAGCTTACATAGCACCTGAAGTTCTTTCACGG 725
Query 540 AGAGAATATGATGGCAAGCACGCGGATGTGTGGTCATGTGGCGTAACCCTTTATGTGATG 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 726 AGAGAATATGATGGCAAGCACGCGGATGTGTGGTCATGTGGAGTAACCCTTTATGTGATG 785
Query 600 CTGGTTGGAGCTTACCCGTTTGAGGACCCTAATGATCCAAAGAACTTCAGGAAAACAATC 659
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 786 CTGGTGGGAGCTTACCCGTTTGAGGACCCTAATGATCCAAAAAACTTCAGGAAAACAATC 845
Query 660 CAACGTATAATGGCTGTACAATACAAGATCCCGGACTATGTACACATATCCCAGGAATGC 719
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 846 CAGCGCATAATGGCTGTACAATACAAGATCCCGGACTATGTTCACATATCTCAGGAATGC 905
Query 720 AAACACCTTCTCTCTCGCATATTCGTCACTAACTCCGCAAAGAGAATCACGCTTAAGGAG 779
||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 906 AAACATCTTCTCTCTCGCATATTCGTCACTAACTCTGCTAAGAGAATCACACTTAAGGAG 965
Query 780 ATCAAGAATCATCCGTGGTACTTGAAGAACTTGCCAAAGGAGCTGCTAGAGTCGGCTCAA 839
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 966 ATCAAGAATCATCCGTGGTACTTGAAGAATTTGCCAAAGGAGCTGCTAGAGTCGGCTCAA 1025
Query 840 GCAGCATATTACAAGAGAGACACGAGCTTCTCTCTTCAAAGCGTAGAGGACATAATGAAG 899
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1026 GCGGCGTATTACAAGAGAGACACAAGCTTCTCTCTTCAAAGCGTAGAGGACATAATGAAG 1085
Query 900 ATAGTTGGAGAAGCAAGGAATCCAGCTCCATCTACTAGTGCTGTCAAAAGCTCGGGCTCa 959
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1086 ATAGTTGGAGAAGCAAGGAATCCAGCTCCATCAACTAGTGCTGTCAAAAGCTCGGGCTCA 1145
Query 960 gaagctgaggaagaagaggaagaggacgttgaagctgaagtggaaga--a-gatga--a- 1013
| |||||| |||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 1146 GGAGCTGATGAAGAAGAGGAAGAGGACGTTGAAGCTGAAGTGGAAGAGGAAGAAGATGAT 1205
Query 1014 gaagacgaatacgagaagCATGTCAAAGAGGCACAGTCTTGTCAAGAGCCTCACAAAGAT 1073
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 1206 GAAGACGAATACGAGAAGCATGTCAAAGAGGCACAGTCTTGTCAAGAGTCTGACAAAGCT 1265
Query 1074 TAAAAGGCAAAATGCTCTCT 1093
||||| | ||||||||||||
Sbjct 1266 TAAAAAGAAAAATGCTCTCT 1285
> AT5G63650.1 | Symbols: SNRK2-5, SNRK2.5, SRK2H | SNF1-related
protein kinase 2.5 | chr5:25481517-25483719 REVERSE LENGTH=1421
Length=1421
Score = 1074 bits (581), Expect = 0.0
Identities = 865/1004 (86%), Gaps = 12/1004 (1%)
Strand=Plus/Plus
Query 21 ATGGACAAGTATGATGTTGTCAAGGATCTGGGAGCTGGGAATTTCGGTGTGGCTCGCCTT 80
|||||||||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||
Sbjct 225 ATGGACAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGAAATTTTGGTGTGGCTCGTCTT 284
Query 81 CTTAGGCACAAGGACACTAAAGAGCTTGTTGCCATGAAATACATCGAGAGAGGCCGCAAG 140
||||| ||||| || || |||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct 285 CTTAGACACAAAGAGACCAAAGAGCTCGTTGCTATGAAATACATTGAGAGAGGTCGCAAG 344
Query 141 ATAGATGAGAACGTGGCGAGAGAGATCATCAACCACAGATCACTTAAGCATCCTAATATC 200
|| |||||||| ||||| |||||||| ||||| || |||||||||| |||||||||||||
Sbjct 345 ATTGATGAGAATGTGGCAAGAGAGATTATCAATCATAGATCACTTAGGCATCCTAATATC 404
Query 201 ATCCGGTTCAAGGAGGTGATTCTGACACCTACTCATCTTGCTATTGTGATGGAGTATGCT 260
||| | |||||||||||||||||||| || ||||||||||| ||||| ||||||||||||
Sbjct 405 ATCAGATTCAAGGAGGTGATTCTGACTCCAACTCATCTTGCAATTGTAATGGAGTATGCT 464
Query 261 TCTGGAGGAGAGCTCTTTGATCGAATCTGTACTGCCGGTAGATTTAGTGAAGCTGAGGCT 320
|||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||
Sbjct 465 TCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGATTCAGTGAAGCTGAGGCT 524
Query 321 AGGTACTTCTTTCAACAGCTGATTTGTGGTGTTGACTACTGCCATTC-CTTGCAAATATG 379
|| ||||||||||| |||||||||||||| || || ||||| ||||| || |||||||||
Sbjct 525 AGATACTTCTTTCAGCAGCTGATTTGTGGCGTGGATTACTGTCATTCACT-GCAAATATG 583
Query 380 TCATAGAGACCTGAAGCTTGAGAACACACTGCTCGATGGGAGCCCTGCTCCGCTTTTGAA 439
||||||||| ||||||||||||| |||||||| ||||| || || || |||||||||||
Sbjct 584 TCATAGAGATTTGAAGCTTGAGAATACACTGCTTGATGGTAGTCCAGCCCCGCTTTTGAA 643
Query 440 AATCTGTGATTTTGGTTACTCTAAGTCATCTATACTACATTCTAGGCCTAAATCGACTGT 499
||||||||||||||||||||| ||||||||| | || || ||||| |||||||| |||||
Sbjct 644 AATCTGTGATTTTGGTTACTCCAAGTCATCTCTGCTTCACTCTAGACCTAAATCAACTGT 703
Query 500 TGGAACTCCAGCATACATAGCACCTGAAGTTCTTTCACGGAGAGAATATGATGGCAAGCA 559
||| |||||||| || || ||||||||||||||||| || ||||||||||| || |||||
Sbjct 704 TGGTACTCCAGCTTATATCGCACCTGAAGTTCTTTCCCGAAGAGAATATGACGGAAAGCA 763
Query 560 CGCGGATGTGTGGTCATGTGGCGTAACCCTTTATGTGATGCTGGTTGGAGCTTACCCGTT 619
|||||||| ||||| ||||| || || |||||||||||| | ||||||| ||| |||||
Sbjct 764 TGCGGATGTTTGGTCCTGTGGTGTGACTCTTTATGTGATGTTAGTTGGAGGTTATCCGTT 823
Query 620 TGAGGACCCTAATGATCCAAAGAA-CTTCAGGAAAACAATCCAACGTATAATGGCTGTAC 678
||| ||||| ||||||| | ||| ||||||||||||||||||||||||||||||||| |
Sbjct 824 TGAAGACCCGGATGATCCGA-GAAACTTCAGGAAAACAATCCAACGTATAATGGCTGTCC 882
Query 679 AATACAAGATCCCGGACTATGTACACATATCCCAGGAATGCAAACACCTTCTCTCTCGCA 738
| |||||||||||||| || || || ||||| ||||| |||| |||||||||||||||||
Sbjct 883 AGTACAAGATCCCGGATTACGTTCATATATCGCAGGAGTGCAGACACCTTCTCTCTCGCA 942
Query 739 TATTCGTCACTAACTCCGCAAAGAGAATCACGCTTAAGGAGATCAAGAATCATCCGTGGT 798
|||| |||||||| || || ||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct 943 TATTTGTCACTAATTCAGCTAAGAGAATCACACTTAAAGAGATCAAGAAGCATCCATGGT 1002
Query 799 ACTTGAAGAACTTGCCAAAGGAGCTG-CTAGAGTCGGCTCAAGCAGCATATTACAAGAGA 857
|||| |||||||||||||||||||| | |||| | |||||||| || || |||||||||
Sbjct 1003 ACTTAAAGAACTTGCCAAAGGAGCTTAC-AGAGCCTGCTCAAGCGGCGTACTACAAGAGA 1061
Query 858 GACACG--A-GCTTCTCTCTTCAAAGCGTAGAGGACATAATGAAGATAGTTGGAGAAGCA 914
|| || | |||| || || |||||||||||||||||||||||||| |||||||||||
Sbjct 1062 GAAACCCCAAGCTTTTCCCTCCAAAGCGTAGAGGACATAATGAAGATCGTTGGAGAAGCC 1121
Query 915 AGGAATCCAGCTCCATCTACTAGTGCTGTCAAAAGCTCGGGCTCagaagctgaggaagaa 974
|||||||||||||| ||| ||| ||| ||||| ||| | | || | |||||||||
Sbjct 1122 AGGAATCCAGCTCCGTCTTCTAATGCCGTCAAGGGCTTTGA-T--GATGATGAGGAAGAT 1178
Query 975 gaggaagaggacgttgaagctgaagtggaagaagatgaagaaga 1018
| ||| || || ||||||| |||| |||||||| ||||||||
Sbjct 1179 GTGGAGGACGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGA 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53764783695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5