BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940367 Length=1605 Score E Sequences producing significant alignments: (Bits) Value AT5G08740.1 | Symbols: NDC1 | NAD(P)H dehydrogenase C1 | chr5:2... 2566 0.0 > AT5G08740.1 | Symbols: NDC1 | NAD(P)H dehydrogenase C1 | chr5:2848506-2851428 REVERSE LENGTH=1911 Length=1911 Score = 2566 bits (1389), Expect = 0.0 Identities = 1535/1607 (96%), Gaps = 4/1607 (0%) Strand=Plus/Plus Query 1 TTCCGGCGATAT-TCAAAGTCAACAATGGCCGTTCTCTCCTCCGTATCTTCTCTCTTACC 59 |||||||||||| | ||||||| ||||||||||||||||||| |||||||||||| |||| Sbjct 82 TTCCGGCGATATAT-AAAGTCAGCAATGGCCGTTCTCTCCTCTGTATCTTCTCTCATACC 140 Query 60 CTTCTCTTATGGGGCAAAGAGACTGACTAGTAAAGCTTCTTTAGCTTCAAGAACTTCTGG 119 ||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| || Sbjct 141 CTTCTCTTATGGGGCAACGAGACTGACTAGTAAAGCTTCATTAGCCTCAAGAACTTCCGG 200 Query 120 ATTCAATCTCTCTTCTCGTTGGCACTCAACGAGAAGCGCCCCTAGGTTGTATCTTTCGAG 179 |||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| Sbjct 201 ATTCAATCTCTCTTCTCGTTGGAACTCAACGAGAAACTCCCCTATGTTGTATCTTTCGAG 260 Query 180 GGCAGTGACAAACAACAGTGGCACCACAGAGATTTCTGAGAATGAAACAGCTCCAAGGAC 239 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 261 AGCAGTGACAAACAACAGTGGCACCACAGAGATTTCTGATAATGAAACAGCTCCAAGGAC 320 Query 240 TTACACATGGCCTGATAACAAGAGACCAAGGGTGTGTATTCTAGGTGGTGGGTTTGGAGG 299 |||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 321 TTACTCATGGCCTGATAACAAGAGGCCAAGGGTGTGCATTCTAGGTGGTGGCTTTGGAGG 380 Query 300 ATTGTACACAGCTTTGAGATTAGAATCGCTTGTGTGGCCTGAAGACAAAAAACCTCAGGT 359 ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 381 ATTGTACACAGCTTTGAGATTAGAATCTCTTGTTTGGCCTGAAGACAAAAAGCCTCAGGT 440 Query 360 TGTTCTGGTTGACCAATCCGAACGTTTTGTGTTCAAGCCGATGTTGTATGAACTTCTCTC 419 ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 441 GGTTTTGGTTGACCAATCCGAACGTTTTGTGTTCAAGCCCATGTTGTATGAACTACTCTC 500 Query 420 TGGAGAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTACTTACAAACACGGG 479 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 501 TGGAGAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTGCTTACAAACACGGG 560 Query 480 GATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGACCATTTAGGAGTGAA 539 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 561 GATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGACCATTTAGGAGTTAA 620 Query 540 TGGGTCTGAAAGTTCTGTTACTGGAGGAACTGTCTTGCTCGAAAGCGGTTTTAAAATTGA 599 ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 621 TGGGTCTGAGATTTCTGTTACTGGAGGAACCGTCTTGCTCGAAAGCGGTTTTAAAATCGA 680 Query 600 ATACGATTGGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGCGC 659 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 681 ATACGATTGGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGTGC 740 Query 660 AATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCTATTAGAGTTAACAAAAAGCT 719 ||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| Sbjct 741 AATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCCATTAGGGTTAACGAAAAGCT 800 Query 720 GAGTAAATTGGAGAGGAAGAATTTCAAAGACGGCTCTGCCATAAAAGTGGCTGTTGTTGG 779 |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct 801 GAGTAAATTGGAGAGGAAGAATTTTAAAGACGGATCTGCCATAAAAGTAGCTGTTGTTGG 860 Query 780 GTGCGGATATGCAGGAGTTGAGTTGGCTGCTACCATATCAGAGAGACTGCAAGATCGTGG 839 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 861 CTGCGGTTATGCAGGAGTAGAGTTGGCTGCTACCATATCAGAGAGACTGCAAGATCGTGG 920 Query 840 AATAGTGCAGTCCATTAACGTATCAAAGGATATACTAACATCAGCCCCTAATGGGAACAG 899 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 921 AATAGTGCAGTCCATTAACGTATCAAAGAATATACTAACATCAGCCCCTGATGGGAACAG 980 Query 900 GGAGGCGGCTATGAAGGTCCTTACGTCGAGAAAAGTCCAATTACTTTTGGGTTATCTGGT 959 || ||||||||||||||||||||||||||||||||||||||||| || |||||||| || Sbjct 981 AGAAGCGGCTATGAAGGTCCTTACGTCGAGAAAAGTCCAATTACTCTTAGGTTATCTTGT 1040 Query 960 TCAATCCATAAAGAGAGCAAGCGA-CTCAGAAGAAGATGAAGGATATTTGTTAGAGCTTC 1018 |||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||| Sbjct 1041 TCAATCCATAAAGAGAGCAAGCAACCT-AGAAGAAGATGAAGGATATTTTTTAGAGCTTC 1099 Query 1019 AGCCTGCAGAAAGAGGATTAGAGAGTCAAATTATTGAAGCGGATATAGTGTTATGGACAG 1078 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100 AACCTGCAGAAAGAGGATTAGAGAGTCAAATTATTGAAGCGGATATAGTGTTATGGACAG 1159 Query 1079 TCGGTTCTAAGCCTTTGCTTACCAAACTAGAACCCTCGGGTCCCAATGTCCTTCCTTTGA 1138 | ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1160 TTGGTGCTAAGCCTTTGCTTACTAAATTAGAACCCTCGGGTCCCAATGTCCTTCCTTTGA 1219 Query 1139 ATGCTAGAGGACAAGCGGAAACAGACGAGACACTCCGTGTTAAAGGACATCCACGGATTT 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1220 ATGCTAGAGGACAAGCGGAAACAGACGAGACACTCCGTGTTAAAGGACATCCACGGATAT 1279 Query 1199 TTGCATTAGGTGATTCTTCTTCTCTAAGAGACTCAAATGGAAAGCTTCTTCCTACAACAG 1258 |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1280 TTGCATTAGGTGATTCGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAG 1339 Query 1259 CTCAGGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATTTGGGCAGCCATAAATA 1318 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1340 CTCAGGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATATGGGCAGCTATAAATA 1399 Query 1319 ACCGACCGTTATTACCATTCAGGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGAT 1378 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1400 ACCGACCTTTATTACCATTCAGGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGAT 1459 Query 1379 ATGATGCTGCTATTTCGCCAAGTTTCATTGAAGGGCTTACTCTTGAAGGTCCAATTGGCC 1438 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1460 ATGATGCTGCTATATCGCCAAGTTTCATTGAAGGGCTTACACTTGAAGGTCCAATTGGTC 1519 Query 1439 ACGCAGCAAGAAAACTGGCGTATTTGATTAGACTACCAACTGATGAACACCGGTTTAAGG 1498 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1520 ACGCAGCGAGAAAACTGGCGTATTTGATTAGACTACCAACTGATGAACACCGGTTTATGG 1579 Query 1499 TCGGAATCAGTTGGTTTGCTAAATCTGCTGTTGACTCAATTGCTTTACTTCAGAGCAATC 1558 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1580 TCAGAATCAGTTGGTTTGCTAAATCTGCTGTTGATTCAATTGCTTTACTTCAGAGCAATC 1639 Query 1559 TAACCAAGGTTTTGTCTGGTTCTTGATCTCTGTTTGTTTTGCTCTGG 1605 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1640 TAACCAAGGTTTTGTCTGGTTCTTGATCTCTGTTTGTTTTGCTCTGG 1686 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79266660555 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5