BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940484

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10140.1 | Symbols: FLC, FLF, AGL25 | K-box region and MADS-...  1020    0.0  


> AT5G10140.1 | Symbols: FLC, FLF, AGL25 | K-box region and MADS-box 
transcription factor family protein  | chr5:3173497-3179448 
REVERSE LENGTH=927
Length=927

 Score = 1020 bits (552),  Expect = 0.0
 Identities = 606/632 (96%), Gaps = 4/632 (1%)
 Strand=Plus/Plus

Query  1    CCCTCTCGGAGACAGAAGCCATGGGGAGaaaaaaaCTAGAAATCAAGCGAATTGAGAACA  60
            |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  92   CCCTCTCGGAG--AGAAGCCATGGGAAGAAAAAAACTAGAAATCAAGCGAATTGAGAACA  149

Query  61   AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC  209

Query  121  AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCTGCTTCCGGCAAGC  180
            |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct  210  AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCCGCCTCCGGCAAGC  269

Query  181  TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAAC  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  270  TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAGC  329

Query  241  ATGCTGATGATCTTAAAGCCTTGGAT-ATTCAGTCAAAAGCTCTGAACTATGGTTCACAC  299
            |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  330  ATGCTGATGATCTTAAAGCCTTGGATCAT-CAGTCAAAAGCTCTGAACTATGGTTCACAC  388

Query  300  CATGAGCTACTTGAACTTGTGGAAAGCAAGCTTGTGGGATCAAATGTCAATAATGTGAGT  359
             |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct  389  TATGAGCTACTTGAACTTGTGGATAGCAAGCTTGTGGGATCAAATGTCAAAAATGTGAGT  448

Query  360  GTCGATACTCTTGTTCAACTGGAGGAACACTTTGAGACTGCCCTCTCCGTAACTAGAGCC  419
             ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  449  ATCGATGCTCTTGTTCAACTGGAGGAACACCTTGAGACTGCCCTCTCCGTGACTAGAGCC  508

Query  420  AAGAAGACAGAACTAATGTTGAAGCTTGTTGAGAACCTCAAAGAAAAGGAGAAATTGCTG  479
            |||||||| ||||| |||||||||||||||||||| || ||||||||||||||| |||||
Sbjct  509  AAGAAGACCGAACTCATGTTGAAGCTTGTTGAGAATCTTAAAGAAAAGGAGAAAATGCTG  568

Query  480  AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAAGAATCATCATGTGGGAGCAGAA  539
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  569  AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAATAATCATCATGTGGGAGCAGAA  628

Query  540  GCTGAGATGGAGATTTCACCTGCAGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCG  599
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  629  GCTGAGATGGAGATGTCACCTGCTGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCA  688

Query  600  CTGCTTAATTAGCCACCTTTAATCGGCGGTTG  631
            || |||||||||||||||| ||||||||||||
Sbjct  689  CTACTTAATTAGCCACCTTAAATCGGCGGTTG  720



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30441893082


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5