BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940484 Length=631 Score E Sequences producing significant alignments: (Bits) Value AT5G10140.1 | Symbols: FLC, FLF, AGL25 | K-box region and MADS-... 1020 0.0 > AT5G10140.1 | Symbols: FLC, FLF, AGL25 | K-box region and MADS-box transcription factor family protein | chr5:3173497-3179448 REVERSE LENGTH=927 Length=927 Score = 1020 bits (552), Expect = 0.0 Identities = 606/632 (96%), Gaps = 4/632 (1%) Strand=Plus/Plus Query 1 CCCTCTCGGAGACAGAAGCCATGGGGAGaaaaaaaCTAGAAATCAAGCGAATTGAGAACA 60 ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 92 CCCTCTCGGAG--AGAAGCCATGGGAAGAAAAAAACTAGAAATCAAGCGAATTGAGAACA 149 Query 61 AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150 AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC 209 Query 121 AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCTGCTTCCGGCAAGC 180 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 210 AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCCGCCTCCGGCAAGC 269 Query 181 TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 270 TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAGC 329 Query 241 ATGCTGATGATCTTAAAGCCTTGGAT-ATTCAGTCAAAAGCTCTGAACTATGGTTCACAC 299 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 330 ATGCTGATGATCTTAAAGCCTTGGATCAT-CAGTCAAAAGCTCTGAACTATGGTTCACAC 388 Query 300 CATGAGCTACTTGAACTTGTGGAAAGCAAGCTTGTGGGATCAAATGTCAATAATGTGAGT 359 |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 389 TATGAGCTACTTGAACTTGTGGATAGCAAGCTTGTGGGATCAAATGTCAAAAATGTGAGT 448 Query 360 GTCGATACTCTTGTTCAACTGGAGGAACACTTTGAGACTGCCCTCTCCGTAACTAGAGCC 419 ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 449 ATCGATGCTCTTGTTCAACTGGAGGAACACCTTGAGACTGCCCTCTCCGTGACTAGAGCC 508 Query 420 AAGAAGACAGAACTAATGTTGAAGCTTGTTGAGAACCTCAAAGAAAAGGAGAAATTGCTG 479 |||||||| ||||| |||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 509 AAGAAGACCGAACTCATGTTGAAGCTTGTTGAGAATCTTAAAGAAAAGGAGAAAATGCTG 568 Query 480 AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAAGAATCATCATGTGGGAGCAGAA 539 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 569 AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAATAATCATCATGTGGGAGCAGAA 628 Query 540 GCTGAGATGGAGATTTCACCTGCAGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCG 599 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 629 GCTGAGATGGAGATGTCACCTGCTGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCA 688 Query 600 CTGCTTAATTAGCCACCTTTAATCGGCGGTTG 631 || |||||||||||||||| |||||||||||| Sbjct 689 CTACTTAATTAGCCACCTTAAATCGGCGGTTG 720 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30441893082 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5