BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940511 Length=748 Score E Sequences producing significant alignments: (Bits) Value AT5G10420.1 | Symbols: | MATE efflux family protein | chr5:327... 597 5e-170 AT5G10430.1 | Symbols: AGP4, ATAGP4 | arabinogalactan protein 4... 226 3e-58 > AT5G10420.1 | Symbols: | MATE efflux family protein | chr5:3273553-3276490 REVERSE LENGTH=1495 Length=1495 Score = 597 bits (323), Expect = 5e-170 Identities = 366/387 (95%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 207 TCAGCTGGGGTGTCACTTGCGGTTCATATTCTCGTGTGTTGGTTCTTCGTGTATGGTTAT 266 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 580 TCAGCTGGAGTGTCACTTGCGGTTCATATTCTCGTGTGTTGGTTCTTCGTCTATGGTTAT 639 Query 267 AAACTCGGAATCATAGGGACCATAGCTAGTGTGAACGTGCCATGGTGGTTGAACATCTTC 326 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 640 AAACTCGGAATCATAGGGACTATGGCTAGTGTGAACGTGCCATGGTGGTTGAACATCTTC 699 Query 327 ATCTTGTTTATGTACAGCACACGTGGTGGTTGTACACTCACTTGGACCGGCTTCTCCACC 386 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 700 ATCTTATTTTTGTACAGCACACGTGGTGGTTGTACACTCACTTGGACCGGCTTCTCCTCA 759 Query 387 GAAGCTTTCACCGGACTTTTAGAATTCACAAAACTCTCTGCCTCTTCCGGAATCATGCTT 446 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 760 GAAGCTTTCACCGGACTTTTAGAATTAACAAAACTCTCTGCCTCTTCCGGAATCATGCTT 819 Query 447 TGTTTAGAGAATTGGTACTATAAAATACTAAT-CTTGATGACCGGAAACCTAGTAAATGC 505 || ||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| Sbjct 820 TGCTTAGAGAATTGGTACTATAAAATACTAATGCT-GATGACCGGGAACCTAGTAAATGC 878 Query 506 GAAAGTTGCGGTGGACTCCTTATCTATATGCATGTCCGTAAATGGTTGGGAGATGATGAT 565 |||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 879 GAAAATTGCTGTGGACTCCTTATCAATATGCATGTCGGTAAATGGTTGGGAGATGATGAT 938 Query 566 CCCACTTGCTTTATTTGCGGGAACCGG 592 |||||||| || || ||||||||||| Sbjct 939 TCCACTTGCCTTCTTCGCGGGAACCGG 965 > AT5G10430.1 | Symbols: AGP4, ATAGP4 | arabinogalactan protein 4 | chr5:3277532-3278313 REVERSE LENGTH=782 Length=782 Score = 226 bits (122), Expect = 3e-58 Identities = 151/165 (92%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 4 TGCTCCTTCTCCGGCTGATGTTCCCGCTGCATCTCCACCAGCACCAGAAGGTCCCACCGC 63 |||||||||||| |||||||||||| | || |||||||||||||| ||||||||||||| Sbjct 303 TGCTCCTTCTCCTGCTGATGTTCCCACCGCCTCTCCACCAGCACCGGAAGGTCCCACCG- 361 Query 64 T-AGCCCAAGCGGTGCTCCAGGACCTTCAGATGCCGCCGCTGCCCCAAGCGCCGCTTTCT 122 | ||||||||| ||||||| |||||||||||||| || |||||||||||||||| |||| Sbjct 362 TGAGCCCAAGCAGTGCTCCCGGACCTTCAGATGCATCCCCTGCCCCAAGCGCCGCATTCT 421 Query 123 CCAACAAGGCTTTCTTCGCCGGAACCGCATTCGCCGCTATTATGT 167 |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 422 CCAACAAGGCTTTCTTCGCCGGAACCGCCTTCGCCGCTATTATGT 466 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36319288281 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5