BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940537 Length=1769 Score E Sequences producing significant alignments: (Bits) Value AT5G10690.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 2778 0.0 > AT5G10690.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein | chr5:3374393-3377451 REVERSE LENGTH=1912 Length=1912 Score = 2778 bits (1504), Expect = 0.0 Identities = 1691/1780 (95%), Gaps = 17/1780 (1%) Strand=Plus/Plus Query 1 AGCCTCCGGTTTCTTTGAAGATGTATCGGATTTCAGCTACTTCTAATCTTGT--C-CCT- 56 ||| || ||| || ||||||||| ||||||||||||||| ||||| |||||| | ||| Sbjct 100 AGCTTCTGGTCTCCTTGAAGATGAATCGGATTTCAGCTATTTCTACTCTTGTCACTCCTC 159 Query 57 T---TC--CTTCCGTCGTCCTCCTTCGTTCCGACACGACGGTGTTATCCTCGCAGAGCTA 111 | || |||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 160 TCCCTCTTCTTCCGTCGTGCTCCTTTGTTCCGACACGACGGTGTTATCCTCGCAGAGCTA 219 Query 112 CTCCTTACTCCAGGCGTATCAATCTCAAGCCTCTCACCTCTCGCATTGTTCTCCTCACGC 171 ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 220 CTCCTTATTCCAGGCGAATCAATCTCAAGCCTCTCACTTCTCGCATTGTTCTCCTCACGC 279 Query 172 GCCGTCGTCAGCTTGGTCAGATCGTGGAGGAGGTGGAAGCAGCTAAGAAACGGTATGGGA 231 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 280 GCCGTCGTCAGCTTGGTCAGATCGTGGAGGAGGTAGAAGCCGCTAAGAAACGGTATGGGA 339 Query 232 GGCTTAACACAATTGTGATGAACTCAGTTCTAGAAGCTTGCGTTCACTGTGGAAATATCG 291 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 340 GGCTCAACACAATTGTGATGAACTCAGTTCTCGAAGCTTGCGTTCACTGTGGAAATATTG 399 Query 292 ATTTGGCTCTTCGGATGTTTCATGAGATGGCGGAACCTGGTGGGATTGGAGTCGACTCTA 351 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 400 ATTTGGCTCTTCGGATGTTCCATGAGATGGCGGAACCTGGTGGAATTGGAGTCGACTCTA 459 Query 352 TTAGTTACGCCACTATCTTGAAGGGATTGGGGAAGGCTCGGAGGATTGACGAAGCGTTCC 411 |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 460 TTAGTTACGCTACTATCTTGAAGGGATTGGGTAAGGCTCGGAGGATTGATGAAGCGTTCC 519 Query 412 AAATGCTGGAGTCTATAGAGCATGGAACTGCTGCTGGGAATCCTAAGTTGTCATCATCTC 471 ||||||||||| |||||||| |||||||||||||||||| ||| || ||||||||||||| Sbjct 520 AAATGCTGGAGACTATAGAGTATGGAACTGCTGCTGGGACTCCCAAATTGTCATCATCTC 579 Query 472 TTATCTATGGTCTGCTTGACGCTCTTATCAATGCTGGAGATTTACGTCGTGCCAATGGTC 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 TTATCTATGGTCTGCTTGACGCTCTTATCAATGCTGGAGATTTACGTCGTGCCAATGGTC 639 Query 532 TGCTTGCACGATATGATATTTTGCTTCTAGATCATGGCACCCCGTCAGTTCTCATCTATA 591 ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 640 TGCTTGCACGATATGATATTTTGCTTCTAGATCATGGTACTCCGTCAGTTCTTATCTATA 699 Query 592 ACTTGTTGATGAAGGGCTATGTCAACTCAGAATCTCCGCAAGCTGCAATAAATTTGCTGG 651 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700 ACTTGCTGATGAAGGGCTATGTCAACTCAGAATCTCCGCAAGCTGCAATAAATTTGCTGG 759 Query 652 ATGAAATGTTACGCCTTAGATTGGAGCCTGATAGGTTGACTTACAATACTTTGATCCATG 711 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 760 ATGAAATGTTACGCCTTAGATTGGAGCCAGATAGGTTGACCTACAATACTTTGATCCATG 819 Query 712 CCTGCATCAAGTGTGGCGA-TATGGATGTGGCTATGAAGTTTTTCAAGGAAATGAAGGAG 770 ||||||| ||||||||||| | |||||| |||||||||||||||||| || ||||||||| Sbjct 820 CCTGCATTAAGTGTGGCGACT-TGGATGCGGCTATGAAGTTTTTCAATGATATGAAGGAG 878 Query 771 AAAGCAGAGGAATATTATGACGATTTTCTTCAGCCAGATGTTGTAACATACACCACTTTG 830 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 879 AAAGCAGAGGAATATTACGACGATTTTCTTCAGCCAGATGTTGTAACCTACACCACTTTG 938 Query 831 GTGAAGGGGTTTGGGGATGCAAAGGATCTGTTATCACTGCAGGAAATATTTTTGGAAATG 890 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 939 GTGAAGGGGTTTGGGGATGCAACGGATCTGTTATCACTGCAGGAAATTTTTTTGGAAATG 998 Query 891 AAATTGTGTGATAACGTGTTCATTGACCGAACTGCATTTACAGCAGTAGTTGATGCTATG 950 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 999 AAATTGTGTGAGAACGTGTTCATTGACCGAACTGCATTTACAGCAGTAGTTGATGCCATG 1058 Query 951 CTGAAGTGTGGTTCAACAAGCGGGGCCCTTTGTGTATTTGGTGAGATATTGAAGAGAAGT 1010 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1059 CTGAAGTGTGGTTCAACAAGCGGGGCCCTTTGTGTATTTGGTGAGATATTGAAGAGAAGT 1118 Query 1011 GGAGCTAACGAAGTCTTGCGACCAAAGCCTCACTTGTACCTGTCTATGATGCGTGCTTTT 1070 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1119 GGAGCTAATGAAGTCTTGCGACCAAAGCCTCACTTGTACCTGTCTATGATGCGTGCGTTT 1178 Query 1071 GCTGTCCAAGGGGATTATGGAATGGTTAGAAATCTGTATCTTCGCTTATGGCCGGATTCT 1130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1179 GCTGTCCAAGGGGATTATGGAATGGTTAGAAATCTGTATCTTCGCTTATGGCCGGATTCT 1238 Query 1131 TCAGGATCAATCTCCAAGGCGGTTCAACAAGAAGCTGATAATCTCCTGATGGAAGCAGCT 1190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1239 TCAGGATCAATCTCCAAGGCGGTTCAACAAGAAGCTGATAATCTCCTGATGGAAGCAGCT 1298 Query 1191 CTCAATGCTGGCCAGCTCGATGAGGCCCTAGGGATTCTTTCAAGTATCGTTAGAAGGTGG 1250 ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1299 CTCAATGATGGCCAGCTCGATGAGGCCCTAGGGATTCTTTTAAGTATCGTGAGAAGGTGG 1358 Query 1251 AAGGCAATACCTTGGACGACTAGTGGAGGC-TG-CTG-T--CCGCCTAGAAGCATTGTTG 1305 ||| |||||||||||||||||||||||||| || ||| | |||||||||| |||||||| Sbjct 1359 AAGACAATACCTTGGACGACTAGTGGAGGCATGGCTGCTGTCCGCCTAGAAACATTGTTG 1418 Query 1306 GGGTTTTCCAA-TCTATATTGCGCCCGCATCTACTTAGTAAGGTGATACCAAGTGAACCA 1364 ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1419 GGGTTTTCCAAGTCTATATTGCGTCCACATCTACTTAGTAAGGTGATACCAAGTGAACCA 1478 Query 1365 ATAGAAAACATTATGATTCGATTTGAAGCCACTCAGCCACTGCTAGGCACTCTGCAGTTG 1424 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1479 ATAGAAAGCATTATGATTCGATTTGAAGCCACTCGGCCACTGCTAGGCACTCTGCAGTTG 1538 Query 1425 AAGAATGTGGTCATGCGGTTTTTCAAGGAGCAAGTTGTACCAATTGTAGACGACTGGGGA 1484 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1539 AAGAATGTGGCCATGCGGTTTTTCAAGGAGCAAGTTGTACCAATTGTAGACGACAGGGGA 1598 Query 1485 AGCTGCATAGGCCTTTTGCATCGGGAGGATTGCAACAATCTTGATGCGCCATTGGTCTCA 1544 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1599 AGCTGCATAGGCCTTTTGCATCGGGAGGATTGCAATAACCTTGATGCGCCATTGGTCTCA 1658 Query 1545 ATGATGAGAAGCCCGCCCACATGTGTGAATACAACAACATCGATTGGTCGTGTCGTGGAT 1604 |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| Sbjct 1659 ATGATGAGAAGCCCGCCCACATGTGTGAGTACAACAACATCGATTGGTCGTGTGGTAGAT 1718 Query 1605 CTGGTTTTGGAAAAGAAACTTAAGATGGTTATAGTTGTTCATTGCGGAAATCTTAGTGGG 1664 || |||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||| Sbjct 1719 CTAGTTTTGGAAAAGAAGCTTAAGATGGTTATAGTTGTTCACTGCGGGAATTTTAGTGGG 1778 Query 1665 GGTGGTTATAGCTCAAAGGCAGTAGGAGCTTTTACAAGAGCACAATTGTATCGGCTATTT 1724 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1779 AGCGGTTATAGCTCAAAGGCAGTAGGAGCTTTTACAAGAGCACAATTGTATCGGCTATTT 1838 Query 1725 GAGCCAGAACAACAGCTGCTTTAGTAAATGTAAGTAATAT 1764 || |||||||| |||||||||||| |||||||||||||| Sbjct 1839 GAATCAGAACAAAAGCTGCTTTAGTGAATGTAAGTAATAT 1878 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87499549935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5