BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940548 Length=922 Score E Sequences producing significant alignments: (Bits) Value AT5G10760.1 | Symbols: | Eukaryotic aspartyl protease family p... 1018 0.0 AT4G03800.1 | Symbols: | transposable element gene | chr4:1743... 84.2 2e-15 AT5G32580.1 | Symbols: | transposable element gene | chr5:1221... 78.7 9e-14 > AT5G10760.1 | Symbols: | Eukaryotic aspartyl protease family protein | chr5:3400342-3402207 REVERSE LENGTH=1766 Length=1766 Score = 1018 bits (551), Expect = 0.0 Identities = 763/864 (88%), Gaps = 20/864 (2%) Strand=Plus/Plus Query 5 agagagagGGGTAACAATGAGCATAATGAGGAATTTCTTGAATATGATAATTCTTCTTTG 64 |||| || || ||| |||||||||||||||||||||||||| |||||||||| | ||||| Sbjct 29 AGAGGGA-GGTTAA-AATGAGCATAATGAGGAATTTCTTGAGTATGATAATTATGCTTTG 86 Query 65 TGTATGTCTCAATTGGTGTTTTACTGAAGGAGCTGAGAAAAGAGAGAGTGGAAAGGTACT 124 ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| Sbjct 87 CGTATGTCTCAATTGGTGTTTTGCTGAAGGAGCTGAGAAAAGCGATAGTGGAAAGGTACT 146 Query 125 TGACTCTTACACCATTCAAGTCAGCTCTCTTTTTCCTTCATCATCATCTTGTGTCCCTTC 184 ||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 147 TGATTCTTACACCATTCAAGTCAGCTCTCTGTTCCCTTCATCATCATCTTGTGTCCCTTC 206 Query 185 TTCAAAAGTATCTAATACCAAGTCATCGCTGCGCGTGGTGCACATGCATGGTGCGTGCTC 244 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 207 TTCAAAAGCATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCTC 266 Query 245 CCATCTTAGTAGCAACAAAGATGCGAGACTCGACCATGACGAAATCCTCAGACGTGATCA 304 |||| | ||||| | ||||||||| ||||||||||||||||| ||||||| ||||| Sbjct 267 GCATC-T--TAGCAGC---GATGCGAGAGTCGACCATGACGAAATCATCAGACGCGATCA 320 Query 305 AGCACGCGTGGAGTCTATCCACTCGAAACTGTCAAAGAATATTGCAGATGAAGTCAGCAA 364 |||||| |||||||| ||| |||| ||| |||||||||||| ||| ||||||||||| | Sbjct 321 AGCACGTGTGGAGTCCATCTACTCAAAATTGTCAAAGAATAGCGCAAATGAAGTCAGCGA 380 Query 365 AGCCAAGTCAACGGAGCTACCAGCCAAAAATGGAATCATACTCGGTTCACCAAACTACAT 424 ||||||||||||||||||||| || |||| |||||||| |||||| ||| ||||||||| Sbjct 381 AGCCAAGTCAACGGAGCTACCGGCTAAAAGTGGAATCACACTCGGATCAGGAAACTACAT 440 Query 425 CGTAACAATCGGAATTGGGACACCGAAGCACGATATATCGCTAATCTTCGACACCGGAAG 484 ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| Sbjct 441 CGTAACAATCGGAATCGGGACACCGAAGCACGATCTATCGCTGGTCTTCGACACCGGAAG 500 Query 485 CGATTTGACATGGACTCAATGCGAGCCATGTCTTGGAAGTTGCTATTCACAAAAGGAACC 544 || |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 501 TGACCTGACATGGACTCAATGTGAGCCATGTCTAGGAAGTTGCTATTCACAAAAGGAACC 560 Query 545 AAAATTTAACCCTTCTTCATCTTCTTCTTACCACAACGTCTCATGCTCATCTCCAATGTG 604 |||||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||| Sbjct 561 AAAATTTAACCCTTCTTCGTCTTCTACTTACCAAAACGTCTCGTGCTCATCTCCAATGTG 620 Query 605 TGGAA-ACACCGCA-AGTTGCTCGGCTTCCAATTGCCTATACGGAATCCGTT-ATGGAGA 661 || || || | | | ||||| ||||||||||| ||| ||||| | ||| ||| | || || Sbjct 621 TG-AAGACGCTG-AGAGTTGTTCGGCTTCCAACTGCGTATACAGTATC-GTTTACGGCGA 677 Query 662 TG-GATCAATTACCGTCGGATTCCTAGCCAAGGAGAAATTCACCTTAACGAACTCTGATG 720 | | || ||||| ||||| || || ||||||||||| ||| ||||||||||||||| Sbjct 678 TAAG-TCGTTTACCCAAGGATTTCTTGCAAAGGAGAAATTTACCCTAACGAACTCTGATG 736 Query 721 TCTTGGACGATGTTTACTTTGGTTGCGGTGAAAATAAC-AGAGGACTTTTCAACGGTGCT 779 | ||||| |||||||||||||||||||||||||| ||| | |||||||||| |||||| | Sbjct 737 TTTTGGAGGATGTTTACTTTGGTTGCGGTGAAAACAACCA-AGGACTTTTCGACGGTGTT 795 Query 780 GCTGG-CATTCTCGGCCTTGGTCCTGGCAAATTCTCATTTCCGTCACAAACAACGACGAC 838 ||||| | ||||||||||||| ||||||||| ||||| | ||| | |||||||| ||||| Sbjct 796 GCTGGGC-TTCTCGGCCTTGGCCCTGGCAAACTCTCACTACCGGCGCAAACAACAACGAC 854 Query 839 TTACAACAATATCTTCTCCTACTG 862 ||||||||||||||||||||||| Sbjct 855 CTACAACAATATCTTCTCCTACTG 878 > AT4G03800.1 | Symbols: | transposable element gene | chr4:1743791-1748332 REVERSE LENGTH=4542 Length=4542 Score = 84.2 bits (45), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 864 TGTGGATGTCGGATTCACACACTCAAGTATTT-TT-ATTAAGTGGGAAAGATTACTCTTG 921 |||||||||||||||||||||||||||||||| || ||| |||| ||||||||| ||||| Sbjct 1295 TGTGGATGTCGGATTCACACACTCAAGTATTTATTTATTTAGTGAGAAAGATTATTCTTG 1236 Query 922 A 922 | Sbjct 1235 A 1235 > AT5G32580.1 | Symbols: | transposable element gene | chr5:12213984-12220094 FORWARD LENGTH=6111 Length=6111 Score = 78.7 bits (42), Expect = 9e-14 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 864 TGTGGATGTCGGATTCACACACTCAAGTATTT-TT-ATTAAGTGGGAAAGATTACTCTTG 921 |||||||||||||||||||||||||||||||| || ||| |||| ||| ||||| ||||| Sbjct 648 TGTGGATGTCGGATTCACACACTCAAGTATTTATTTATTTAGTGAGAAGGATTATTCTTG 589 Query 922 A 922 | Sbjct 588 A 588 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45060029859 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5