BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940565 Length=1234 Score E Sequences producing significant alignments: (Bits) Value AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 874 0.0 > AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | chr5:3459273-3461734 REVERSE LENGTH=1574 Length=1574 Score = 874 bits (473), Expect = 0.0 Identities = 778/918 (85%), Gaps = 50/918 (5%) Strand=Plus/Plus Query 7 TTGCTCTCTCGAAGATGGCTGGTTCTAGGAAGCGTTCATCAGCAAACAACAGAC--G-TT 63 ||||| | |||||||||| |||||||||||||||||||||||| || ||||||| | || Sbjct 91 TTGCT-T-TCGAAGATGGTTGGTTCTAGGAAGCGTTCATCAGCCAAGAACAGACTTGTTT 148 Query 64 CTTC-T--AGTCGTTCTTCTGGAAAGGATAAGGTTTCTGATGCTCCAAAATATGGTGAAG 120 |||| | | |||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 149 CTTCTTCAACTCGTTCTTCTGGGAAGGATAAGGTTTCTGATGCTCGTAAATATGGTGAAG 208 Query 121 CCTTGGTGGGTTCAAGGATTA-GAGTTTGGTGGCCGTTAGACCGCAAATTCTACAAGGGT 179 |||||||||||||||||| || |||||||||||||| | ||| |||||||||| |||||| Sbjct 209 CCTTGGTGGGTTCAAGGA-TACGAGTTTGGTGGCCGATGGACAGCAAATTCTATAAGGGT 267 Query 180 GTGGTGGATTCCTATGTCTCTTCCAAGAAGAAACATCGGGTTTTCTATGAAGATGGTGAT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 GTGGTGGATTCCTATGTCTCTTCCAAGAAGAAACATCGGGTTTTCTATGAAGATGGTGAT 327 Query 240 AAAGAGACCTTGGATTTGAAGAAGGAAAGATGGGAGTTGATTGAAGAAGATGATACTGAA 299 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 328 AAAGAGACCTTGGATCTGAAGAAGGAGAGATGGGAGTTGATTGAAGAAGATGATGCTGAA 387 Query 300 TCTGAATCTGATGAGATCTCCCTTCAGGATGAATCTGCTGATGAGAGTTCTGAGGGTACT 359 ||||||||||||||||||||||| ||||| |||||||||| |||||||||||| || ||| Sbjct 388 TCTGAATCTGATGAGATCTCCCTACAGGAGGAATCTGCTGGTGAGAGTTCTGAAGGCACT 447 Query 360 CCAGAACCGCCTAAAGGGAAAGGGAAGTCATCCTTAAAAGGAAGGACAGATGATGCTATG 419 ||||||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||| Sbjct 448 CCAGAACCGCCTAAAGGGAAAGGGAAGGCATCTTTAAAAGGAAGGACGGATGAAGCTATG 507 Query 420 CCGAAAAAGAGACGGAAGATAGATTCTTCATCAAAGAGCAAATCCAAAGAGGTGGAGAAG 479 || ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 508 CCCAAAAAGAAACAGAAGATAGATTCTTCATCAAAGAGCAAGGCCAAAGAGGTGGAGAAG 567 Query 480 AAGACCTCGAAGCCTGAAACTGAGAAAAATGGCAAAATGGGTGATATCGG-GGGTAAGAT 538 ||| |||| ||||| |||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 568 AAGGCCTCAAAGCCCGAAACTGAGAAAAATGGCAAAATGGGTGATATTGGTGGG-AAGAT 626 Query 539 TGTAGCAGCGGCCTCACGCATGAGTGGAAGATTCCGAAGCAAGGGGAATAACAATGAAAA 598 |||||||||||| ||||||||||||| ||| || || |||||||||||| || |||| Sbjct 627 TGTAGCAGCGGCATCACGCATGAGTGAAAGGTTTCGGAGCAAGGGGAATGTGGATCAAAA 686 Query 599 AGAGACATCCAAGTCCTTGAAAAAACCGAGGA---CTTC----T--ACCAA-A--ATAG- 645 ||||||||| ||| ||| ||||||||| | || |||| | ||||| | | | Sbjct 687 AGAGACATCAAAGGCCTCGAAAAAACCAAAGATGTCTTCAAAGTTGACCAAGAGGAAACA 746 Query 646 C-C--A--A--AAG--GAA--TG--GCT-CTGATGATGATAATGATGCTTCAAGCGAAGA 691 | | | | ||| ||| || | ||| |||||||| |||| |||| |||||||| Sbjct 747 CACTGATGACCAAGATGAAGATGAAGAAGCTGGTGATGATATTGATACTTCTAGCGAAGA 806 Query 692 GGCCAAGCCCAAGGCCATGAAGTCCAGCAACTCCAACGCTGATGAAGATGCTGAAAATAA 751 ||| ||||| |||| | || ||| |||||||||| |||||||||| |||||||||| Sbjct 807 GGCGAAGCCTAAGGTGTTAAAATCCTGCAACTCCAATGCTGATGAAGTTGCTGAAAATTC 866 Query 752 TACT-ACTGATGATGAGGC-----TTCGAAAT-CCAGCAACTCTAACACTGACAAAGAGG 804 | || | ||| |||||| | ||| ||| ||| ||||||||| |||| ||||| | Sbjct 867 TTCTGA-TGAAGATGAGCCCAAGGTTCTAAAAACCAACAACTCTAAGGCTGATAAAGATG 925 Query 805 AAGGGGCTGATGCTGAGAATGAAACTTCTGAAGATGAGGCCGAGCTCAAGGCCTTGAAAC 864 ||| | || | ||||||||||| ||||| |||||||| |||| ||||||| ||||| Sbjct 926 AAGATGAAGA-G--GAGAATGAAACATCTGATGATGAGGCTGAGCCCAAGGCCCTGAAAT 982 Query 865 CCAGCAACTCCAACGCTG 882 |||||||||||| ||| Sbjct 983 TGAGCAACTCCAACTCTG 1000 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60642258360 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5