BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940600 Length=544 Score E Sequences producing significant alignments: (Bits) Value AT5G11260.1 | Symbols: HY5, TED 5 | Basic-leucine zipper (bZIP)... 885 0.0 > AT5G11260.1 | Symbols: HY5, TED 5 | Basic-leucine zipper (bZIP) transcription factor family protein | chr5:3593380-3594992 REVERSE LENGTH=902 Length=902 Score = 885 bits (479), Expect = 0.0 Identities = 513/529 (97%), Gaps = 3/529 (1%) Strand=Plus/Plus Query 12 GTAAGAAAAATGCAGGAACAAGCGACTAGCTCTTTAGCTGCAAGCTCTTTACCATCAAGC 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GTAAGAAAAATGCAGGAACAAGCGACTAGCTCTTTAGCTGCAAGCTCTTTACCATCAAGC 243 Query 72 AGCGAGAGGTCATCAAGCTCTGCTCCACATTTGGAGATCAAAGAAGGAATTGAAAGCGAT 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 AGCGAGAGGTCATCAAGCTCTGCTCCACATTTGGAGATCAAAGAAGGAATTGAAAGCGAT 303 Query 132 GAGGAGATACGGCGAGTGCCGGAGTTCGGAGGAGAAGCTGCCGGAAAAGAAACTTCCGGT 191 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 304 GAGGAGATACGGCGAGTGCCGGAGTTTGGAGGAGAAGCTGTCGGAAAAGAAACTTCCGGT 363 Query 192 AGAGAATCTGGATCGGCGACTGGTCAAGAGCGGACACAGACGGCTGTCGGCGAAAGTCAA 251 |||||||||||||||||||| ||||| |||||||||||| || ||||||| ||||||||| Sbjct 364 AGAGAATCTGGATCGGCGACCGGTCAGGAGCGGACACAGGCGACTGTCGGAGAAAGTCAA 423 Query 252 AGAAAGCGAGGGAGGACACCGGCGGAGAAAGAGAACAAGCGGCTGAAGAGGTTGTTGAGG 311 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 AGGAAGCGAGGGAGGACACCGGCGGAGAAAGAGAACAAGCGGCTGAAGAGGTTGTTGAGG 483 Query 312 AACAGAGTTTCAGCGCAGCAAGCAAGAGAGAGGAAAAAGGCTTACTTGAGTGAGTTGGAA 371 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 484 AACAGAGTTTCAGCTCAGCAAGCAAGAGAGAGGAAAAAGGCTTACTTGAGCGAGTTGGAA 543 Query 372 AACAGAGTGAAAGACTTGGAGAACAAAAACTCTGAACTTGAAGAGCGACTCTCTACTCTC 431 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 AACAGAGTGAAAGACTTGGAGAACAAAAACTCTGAACTTGAAGAGCGACTCTCTACTCTT 603 Query 432 CAGAACGAGAACCAGATGCTTAGACATATTCTGAAGAACACAACAGGAAACAAGAGAGGA 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 CAGAACGAGAACCAGATGCTTAGACATATTCTGAAGAACACAACAGGAAACAAGAGAGGA 663 Query 492 AGTGGTGGT--T-CTAACGCTGATGCAAGCCTTTGATCTCCTTCTTCTT 537 |||||||| | |||| ||||||||||||||||||||||||||||||| Sbjct 664 GGTGGTGGTGGTTCTAATGCTGATGCAAGCCTTTGATCTCCTTCTTCTT 712 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26071522293 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5