BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940600

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11260.1 | Symbols: HY5, TED 5 | Basic-leucine zipper (bZIP)...   885    0.0  


> AT5G11260.1 | Symbols: HY5, TED 5 | Basic-leucine zipper (bZIP) 
transcription factor family protein | chr5:3593380-3594992 
REVERSE LENGTH=902
Length=902

 Score =  885 bits (479),  Expect = 0.0
 Identities = 513/529 (97%), Gaps = 3/529 (1%)
 Strand=Plus/Plus

Query  12   GTAAGAAAAATGCAGGAACAAGCGACTAGCTCTTTAGCTGCAAGCTCTTTACCATCAAGC  71
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  184  GTAAGAAAAATGCAGGAACAAGCGACTAGCTCTTTAGCTGCAAGCTCTTTACCATCAAGC  243

Query  72   AGCGAGAGGTCATCAAGCTCTGCTCCACATTTGGAGATCAAAGAAGGAATTGAAAGCGAT  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  244  AGCGAGAGGTCATCAAGCTCTGCTCCACATTTGGAGATCAAAGAAGGAATTGAAAGCGAT  303

Query  132  GAGGAGATACGGCGAGTGCCGGAGTTCGGAGGAGAAGCTGCCGGAAAAGAAACTTCCGGT  191
            |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct  304  GAGGAGATACGGCGAGTGCCGGAGTTTGGAGGAGAAGCTGTCGGAAAAGAAACTTCCGGT  363

Query  192  AGAGAATCTGGATCGGCGACTGGTCAAGAGCGGACACAGACGGCTGTCGGCGAAAGTCAA  251
            |||||||||||||||||||| ||||| |||||||||||| || ||||||| |||||||||
Sbjct  364  AGAGAATCTGGATCGGCGACCGGTCAGGAGCGGACACAGGCGACTGTCGGAGAAAGTCAA  423

Query  252  AGAAAGCGAGGGAGGACACCGGCGGAGAAAGAGAACAAGCGGCTGAAGAGGTTGTTGAGG  311
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  424  AGGAAGCGAGGGAGGACACCGGCGGAGAAAGAGAACAAGCGGCTGAAGAGGTTGTTGAGG  483

Query  312  AACAGAGTTTCAGCGCAGCAAGCAAGAGAGAGGAAAAAGGCTTACTTGAGTGAGTTGGAA  371
            |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  484  AACAGAGTTTCAGCTCAGCAAGCAAGAGAGAGGAAAAAGGCTTACTTGAGCGAGTTGGAA  543

Query  372  AACAGAGTGAAAGACTTGGAGAACAAAAACTCTGAACTTGAAGAGCGACTCTCTACTCTC  431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  544  AACAGAGTGAAAGACTTGGAGAACAAAAACTCTGAACTTGAAGAGCGACTCTCTACTCTT  603

Query  432  CAGAACGAGAACCAGATGCTTAGACATATTCTGAAGAACACAACAGGAAACAAGAGAGGA  491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  604  CAGAACGAGAACCAGATGCTTAGACATATTCTGAAGAACACAACAGGAAACAAGAGAGGA  663

Query  492  AGTGGTGGT--T-CTAACGCTGATGCAAGCCTTTGATCTCCTTCTTCTT  537
             ||||||||  | |||| |||||||||||||||||||||||||||||||
Sbjct  664  GGTGGTGGTGGTTCTAATGCTGATGCAAGCCTTTGATCTCCTTCTTCTT  712



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5