BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940697
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12110.1 | Symbols: | Glutathione S-transferase, C-terminal... 1002 0.0
AT5G19510.1 | Symbols: | Translation elongation factor EF1B/r... 560 6e-159
AT5G19500.1 | Symbols: | Tryptophan/tyrosine permease | chr5:6... 126 3e-28
> AT5G12110.1 | Symbols: | Glutathione S-transferase, C-terminal-like;Translation
elongation factor EF1B/ribosomal protein
S6 | chr5:3914468-3915968 FORWARD LENGTH=938
Length=938
Score = 1002 bits (542), Expect = 0.0
Identities = 658/710 (93%), Gaps = 23/710 (3%)
Strand=Plus/Plus
Query 15 GCATCAATGGCGGTTACATTTTCTGATCTGCACACAGAGCAAGGTCTCAAAACCCTCGAG 74
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 10 GCATCAATGGCGGTTACATTTTCTGATCTCCACACAGAGCGAGGTCTCAAAACCCTCGAG 69
Query 75 GAACATCTCGCCGGAAAAACCTACATCTCCGGCGATCAGCTTTC-ATTGGATGATGTGAA 133
|||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 70 GAACATCTCGCCGGTAAAACGTACATCTCCGGCGATCAGCTTTCGGTT-GATGATGTGAA 128
Query 134 GGTTTACGCTGCCGTATTGGAGAAGCCAGGCGATGGCTTCCCCAATGCTAGCAAGTGGTA 193
|||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 129 GGTTTACGCTGCCGTATTGGAGAATCCAGGTGATGGTTTTCCCAATGCTAGCAAGTGGTA 188
Query 194 CGATTCCGTTGCTTCTCACCTCGCTAAAAGTTTTCCCGGGAAAGCCGTCGGAGTGAGAGT 253
|||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||
Sbjct 189 CGATTCTGTTGCTTCTCACCTAGCTAAAAGTTTTCCCGGGAAAGCAGACGGAGTGAGAGT 248
Query 254 TGGTGGTGGTGTTG---CTCCATCTGAAG--C-TCCGCAGACTGAGGCACCTGCTGCTGC 307
|||||||||||||| |||||||||||| | ||| || ||||||| | | |||||||
Sbjct 249 TGGTGGTGGTGTTGCTCCTCCATCTGAAGCTCATCCACATACTGAGG-AAC--CTGCTGC 305
Query 308 TGGAGCTGACGGtgatgttgatgatgatgatgatgatgatattgatctttttgctgatga 367
| || | ||||| || | ||||||||||||||||||||||||||| ||||||||
Sbjct 306 T-GA--T---GGTGA---TG--G-TGATGATGATGATGATATTGATCTTTTCGCTGATGA 353
Query 368 gactgaagatgaGAAAAAAGCTGCTGAGGAGAGAGAAGCTTCTAAGAAGGATACTAAGAA 427
||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 354 GACTGAAGATGAGAAAAAAGCTGCTGAAGAGAGAGAAGCTGCTAAGAAAGATACTAAGAA 413
Query 428 GACTAAAGAGAGTGGAAAATCTTCTGTGCTACTGGAAGTAAAGCCATGGGATGATGAAAC 487
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 414 GACTAAAGAGAGTGGAAAATCTTCTGTGCTACTGGAAGTAAAACCATGGGATGATGAAAC 473
Query 488 CGATATGAAGAAGTTGGAAGAAGCTGTTCGTAGTGTTCAGATGCCGGGTCTTTCATGGGG 547
||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 474 CGACATGAAGAAGTTAGAAGAAGCTGTTCGTAGTGTTCAGATGCCAGGTCTTACATGGGG 533
Query 548 AGCTTCGAAATTGGTACCTGTTGGTTACGGGATAAAGAAACTCACAATCATGATGACAAT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGCTTCGAAATTGGTACCTGTTGGTTACGGGATAAAGAAACTCACAATCATGATGACAAT 593
Query 608 TGTTGACGACCTTGTGTCTGTGGACAATCTCATTGAAGACCATCTCACCTCAGAGCCTAA 667
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 594 TGTTGATGACCTTGTGTCTGTGGACAACCTCATTGAAGACCATCTCACCTCAGAGCCTAA 653
Query 668 CAACGAGTACATCCAAAGTGTCGACATTGTTGCTTTTAACAAGATTTAGA 717
|||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 654 CAACGAGTACATCCAAAGTGTCGATATTGTCGCTTTTAACAAGATTTAGA 703
> AT5G19510.1 | Symbols: | Translation elongation factor EF1B/ribosomal
protein S6 family protein | chr5:6581658-6583248
REVERSE LENGTH=982
Length=982
Score = 560 bits (303), Expect = 6e-159
Identities = 593/726 (82%), Gaps = 47/726 (6%)
Strand=Plus/Plus
Query 14 AGCATCAATGGCGGTTACATTTTCTGATCTGCACACAGAGCAAGGTCTCAAAACCCTCGA 73
|||| ||||||| ||||| ||||| ||||| ||||||||| | ||| ||||| || | ||
Sbjct 105 AGCAACAATGGCCGTTACCTTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGA 164
Query 74 GGAACATCTCGCCGGAAAAACCTACATCTCCGGCGATCAGCTT-TCAT-TGGATGATGTG 131
||| || |||||||||||||||||||||||||| ||||| || || | ||||||||||
Sbjct 165 GGAGCACCTCGCCGGAAAAACCTACATCTCCGGAGATCA-ATTGTC-TGTGGATGATGTC 222
Query 132 AAGGTTTACGCTGCCG-T--ATTGGAGAAGCCAGGCGATGGCTTCCCCAATGCTAGCAAG 188
|||||||||||||||| | | | || || ||| |||||| |||||||||||||||||||
Sbjct 223 AAGGTTTACGCTGCCGTTCCAGT-GA-AACCCA-GCGATGCCTTCCCCAATGCTAGCAAG 279
Query 189 TGGTACGATTCCGTTGCTTCTCACCTCGCTAAAAGTTTTCCCGGGAAA-GCCGTCGGAGT 247
|||||||| ||||| ||||| || || |||||||| |||||| ||||| ||||| |||||
Sbjct 280 TGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAG-TTTCCCTGGAAAGGCCGTTGGAGT 338
Query 248 GAGAGTTGGTGGTGGTGTTGCTCCAT-CTGAAGCTCCGCAGACTGAGGCACCTGCTGCTG 306
| | || ||| | | | || | | ||| ||| | ||| ||| | | ||| ||
Sbjct 339 -ACAATT--CGGT-G-GCT-CTGC-TGCTGCTGCT-C-CAG-CTGTTGAAGCTGAGGCAC 388
Query 307 CTGGAGCTGACGGtgatgttgatgatgatgatgatgatgatattgatctttttgctgatg 366
||| ||||| | | | ||||||||||||||| ||| ||||| |||| ||| |
Sbjct 389 CTGCAGCTG-C----A-GCTGATGATGATGATGA-CATG-----GATCTCTTTGGTGACG 436
Query 367 agactgaagatgaGAAA-AAAGCTGCTGAGGAGAGAGAAGCTTCTAAGAAGGATACTAAG 425
|||| ||||| || ||| |||||||| |||||||| || ||| |||||||||| || |||
Sbjct 437 AGACCGAAGAAGA-AAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAGAAGGACACCAAG 495
Query 426 AAGACTAAAGAGAGTGGAAAATCTTCTGTGCTAC-TGGAAGTAAAGCCATGGGATGATGA 484
||| |||||||||||||||| ||||||||||| | |||| || |||||||||||||||||
Sbjct 496 AAGCCTAAAGAGAGTGGAAAGTCTTCTGTGCT-CATGGATGTTAAGCCATGGGATGATGA 554
Query 485 AACCGATATGAAGAAGTTGGAAGAAGCTGTTCGTAGTGTTCAGATGCCGGGTC-TTTCAT 543
|||||| |||||||| ||||||| ||||||||| ||||| ||||||| |||| |||| |
Sbjct 555 AACCGACATGAAGAAACTGGAAGAGGCTGTTCGTGGTGTTGAGATGCCTGGTCTTTTC-T 613
Query 544 GGGGAGCTTCGAAA-TTGGTACCTGTTGGTTACGGGATAAAGAAACTCACAATCATGATG 602
||||||| || ||| || ||||| |||||||| ||||| |||||||||||||| ||| |
Sbjct 614 GGGGAGCCTCAAAACTT-GTACCAGTTGGTTATGGGATCAAGAAACTCACAATTATGTTC 672
Query 603 ACAATTGTTGACGACCTTGTGTCTGTGGACAATCTCATTGAAGACCAT-CTCACCTCAGA 661
|| |||||||| ||||| ||||| |||||| ||||||||||| | | |||||||||||
Sbjct 673 ACGATTGTTGATGACCTCGTGTCCCCGGACAACCTCATTGAAGA-CTTCCTCACCTCAGA 731
Query 662 GCCTAACAACGAGTACATCCAAAGT-GTCGACATTGTTGCTTTTAACAAGATTTAGAGAC 720
||||||||||||||||||||| ||| || |||||||| ||||| ||||||||||||||||
Sbjct 732 GCCTAACAACGAGTACATCCAGAGTTGT-GACATTGTCGCTTTCAACAAGATTTAGAGAC 790
Query 721 TCCAAA 726
| ||||
Sbjct 791 TTCAAA 796
> AT5G19500.1 | Symbols: | Tryptophan/tyrosine permease | chr5:6578952-6581945
FORWARD LENGTH=1831
Length=1831
Score = 126 bits (68), Expect = 3e-28
Identities = 90/100 (90%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 629 GGACAATCTCATTGAAGACCAT-CTCACCTCAGAGCCTAACAACGAGTACATCCAAAGT- 686
|||||| ||||||||||| | | |||||||||||||||||||||||||||||||| |||
Sbjct 1827 GGACAACCTCATTGAAGA-CTTCCTCACCTCAGAGCCTAACAACGAGTACATCCAGAGTT 1769
Query 687 GTCGACATTGTTGCTTTTAACAAGATTTAGAGACTCCAAA 726
|| |||||||| ||||| ||||||||||||||||| ||||
Sbjct 1768 GT-GACATTGTCGCTTTCAACAAGATTTAGAGACTTCAAA 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35716478517
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5