BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940699 Length=1168 Score E Sequences producing significant alignments: (Bits) Value AT5G12130.1 | Symbols: PDE149, ATTERC | integral membrane TerC ... 1687 0.0 > AT5G12130.1 | Symbols: PDE149, ATTERC | integral membrane TerC family protein | chr5:3919594-3922485 FORWARD LENGTH=1505 Length=1505 Score = 1687 bits (913), Expect = 0.0 Identities = 1106/1194 (93%), Gaps = 34/1194 (3%) Strand=Plus/Plus Query 2 GGATTTGACGCAAAACGCAATGAGCTTAGCTTCAGTTATCCACCACGGAATTTTTGCTCC 61 ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1 GGATTTGACACAAAACGCAATGAGCTTAGCTTCAGTTATCCACCACGGAATTCTCCCTCC 60 Query 62 GGCGAAATCGGATCGAATCTTTCTCACCATTCCGGTAGTT-CCGCCGGATTTCCGAGCTC 120 ||| |||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||| Sbjct 61 GGCCAAATCGGATCGAATCTTTCTTACCATTCCGGT-GTTCCCGCCGGATTTCAGAGCTC 119 Query 121 GTGGATGGACTGAGTCT-C---GT-T-T-C-------T--CTCTC--GTTTCAGCTGCGA 162 ||||||||||| ||||| | | | | | | ||||| | ||||||||| | Sbjct 120 GTGGATGGACTAAGTCTCCTTTCTCTCTCCTTATAAATCCCTCTCTTGCTTCAGCTGCCA 179 Query 163 ATCGTCGTCTCTCTCATCTTCCTCCTATTTCTTGCTCCAGAGAAATCGATCAGGAAGAT- 221 |||||||||||||||||||||||||||| | || ||||||| || |||||||||||| Sbjct 180 ATCGTCGTCTCTCTCATCTTCCTCCTATCGCGTGTTCCAGAGGTATTGATCAGGAAGATG 239 Query 222 --GATAAGGAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATG----CA----A- 270 || ||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 240 AAGAGAAGGAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATGCAACCACTTCAC 299 Query 271 GCTCTTCGTCATCAGTAGATAGTGGAGGCTTGAACGATTATCAACAAGAAGAAACATACA 330 ||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||| Sbjct 300 GCTCTTCTTCATCAGTAGATAGTGGAGGCCTGAAAGATTATCAACAAGAAGAAACTTACA 359 Query 331 AAACTTCCTTCAAGACTGTTGCCTTGTGTGTAGGTACTGCGGTGGCTTTTGGAATCGGAA 390 ||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||| Sbjct 360 AAACTTCCTTCAAGACTGTTGCCTTGTGTGTTGGCACTGCGGTGGCATTTGGAATTGGAA 419 Query 391 TAGGTTTGAAGGAAGGTGTTGGCAAGGCATCAGAGTTTTTCGCAGGCTATATATTGGAGC 450 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 420 TAGGTTTGAAGGAAGGTGTTGGCAAGGCTTCAGAGTTTTTCGCAGGCTACATATTGGAGC 479 Query 451 AAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGC 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGC 539 Query 511 CACCCATGTATCAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTCTTCCGTT 570 ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 540 CACTCATGTATCAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCCGTT 599 Query 571 TCACGCTCATATTACTAGGAACAGCTACTCTTCAGAAATTTGAAGCAGTCAATCTACTGC 630 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 600 TCACGCTCATTTTACTAGGAACAGCTACTCTTCAGAAATTTGAAGCAGTCAACCTACTGC 659 Query 631 TTGCTGCTGTGCTTCTT-TATTCATCTTTCAAGTTATTTGCAAGTGAAGAAGATGATACA 689 |||||||||| | |||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 660 TTGCTGCTGTAC-TCTTATATTCGTCATTCAAGTTATTTGCAAGTGAAGAAGATGATACA 718 Query 690 GATCTATCCGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATCAAGT 749 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GATCTATCGGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATCAAGT 778 Query 750 TACGATGGAAACCGGTTTTTCACAAAGCATGATGGCATTTTGAAAGCCACACCATTGCTA 809 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 TACGATGGAAATCGATTTTTCACAAAGCATGATGGCATTTTGAAAGCCACACCATTGCTA 838 Query 810 CTTACAGTAGCAGTGATCGAGCTCAGTGACATAGCATTTGCGGTTGACTCGATACCAGCT 869 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 839 CTTACAGTAGCAGTGATCGAGCTCAGTGACATAGCATTTGCGGTTGACTCAATACCAGCT 898 Query 870 GTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACCTCTAATCTCTTTGCAATCCTA 929 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 899 GTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACTTCTAATCTCTTTGCAATCCTA 958 Query 930 GGACTAAGGTCTCTCTATACACTTATTTCTGAAGGAATGGACGAGCTAGAATACTTGCAG 989 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 959 GGACTAAGGTCTCTCTATACACTGATTTCTGAAGGAATGGACGAGCTGGAATACTTGCAG 1018 Query 990 CCATCAATAGCAGTTGTTCTTGGCTTCATAGGATTCAAGATGATCCTTGATTTCTTTGGG 1049 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1019 CCATCAATAGCAGTTGTTCTTGGCTTCATAGGAGTCAAGATGATCCTTGATTTCTTTGGC 1078 Query 1050 TTCCACGTATCGACTGAGGCATCACTTGGTGTCGTGGCGCTTTCTCTCGGCACAGGAGTA 1109 |||||| |||| || |||||||||||||||||||| || ||||||||| | || |||||| Sbjct 1079 TTCCACATATCAACAGAGGCATCACTTGGTGTCGTTGCACTTTCTCTCAGTACCGGAGTA 1138 Query 1110 CTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAACTAAGAACTGAGAACTGA 1163 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1139 CTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAACTAAGAACTGAGAGCTGA 1192 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57329022390 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5