BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940745 Length=1816 Score E Sequences producing significant alignments: (Bits) Value AT5G12860.1 | Symbols: DiT1 | dicarboxylate transporter 1 | chr... 2867 0.0 > AT5G12860.1 | Symbols: DiT1 | dicarboxylate transporter 1 | chr5:4059686-4061950 REVERSE LENGTH=1946 Length=1946 Score = 2867 bits (1552), Expect = 0.0 Identities = 1746/1836 (95%), Gaps = 27/1836 (1%) Strand=Plus/Plus Query 1 TCGCCGACGACGCTACAACAATGGCGtctctcgctctctccggctcctgctctctcgctt 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 12 TCGCCGACGACGCTACAACCATGGCGTCTCTCGCTCTCTCCGGCTCCTGCTCTCTCGCTT 71 Query 61 tccctctcaaatctcgatctctctctctccctcgtcctccttcttcctctctcaatttga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 TCCCTCTCAAATCTCGATCTCTCTCTCTCCCTCGTCCTCCTTCTTCCTCTCTCAATTTGA 131 Query 121 cgaaacctctccgatctctcgactctcGCTTCTCCTTACTCAAATCTCCACTTCCCGCCG 180 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 132 CGAAACCTCTCCGATCTCTCGATTCTCGCTTCTCCTTACTCAAATCTCCACTTCCCG--T 189 Query 181 CTTCTCTTA-ACCGGAGATCATCAACTCTCGTTAAAGCCTCTT---CCGCCGC-T--GCT 233 | ||| ||| |||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct 190 C-TCT-TTACGCCGGAGATCATCAACTCTCGTTAAAGCCTCTTCCACCGTCGCTTCAGCT 247 Query 234 T-CTCCGTCT-C--CT-C-CCGTT-GCTCCAGCTCCCGTTCCATGGCAAGGAGCTGCCAT 286 | || | ||| | || | || || | ||||||||| ||||||||||||||||||||||| Sbjct 248 TCCT-CTTCTCCAACTCCTCCTTTGGTTCCAGCTCCGGTTCCATGGCAAGGAGCTGCCAT 306 Query 287 TAAGCCTCTTATCGCATCGATCGCTACTGGTTTGATTCTATGGTTCGTTCCTGTCCCCGA 346 |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 307 TAAGCCTCTTCTCGCTTCGATCGCTACTGGTTTGATTCTATGGTTCGTTCCAGTCCCCGA 366 Query 347 AGGTGTCACTCGCAACGCGTGGCAATTACTCGCGATCTTCCTCGCCACCATCGTCGGGAT 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 AGGTGTCACTCGCAACGCGTGGCAATTACTCGCGATCTTCCTCGCCACCATCGTCGGGAT 426 Query 407 CATCACTCAGCCGCTTCCTCTCGGCGCTGTTGCTCTATTGGGATTAGGAGCTTCCGTTCT 466 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 427 CATCACTCAGCCGCTTCCTCTCGGTGCTGTTGCTCTAATGGGATTAGGAGCTTCCGTTCT 486 Query 467 CACCAAAACCCTAACGTTCACCGCCGCGTTCTCCGCTTTCGGAGATCCAATCCCGTGGCT 526 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 487 CACCAAAACCCTAACGTTCGCCGCCGCGTTCTCCGCTTTCGGAGATCCAATCCCGTGGCT 546 Query 527 CATCGCTCTCGCCTTCTTCTTCGCTCGTGGTTTCATCAAAACCGGTCTCGGTAACCGTGT 586 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 547 CATCGCTCTTGCCTTCTTCTTCGCTCGCGGTTTCATCAAAACCGGTCTCGGTAACCGTGT 606 Query 587 AGCTTACCAGTTCGTTAGACTCTTTGGTAGCTCCTCGCTTGGGCTTGGTTACAGTCTCGT 646 |||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| Sbjct 607 AGCTTACCAGTTCGTTAGACTCTTCGGTAGCTCCTCCCTTGGTCTCGGTTACAGTCTCGT 666 Query 647 CTTCAGTGAAGCACTCTTAGCTCCGGCGATTCCTTCAGTCTCGGCTCGTGCCGGTGGAAT 706 |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 667 CTTCAGTGAAGCTCTTTTAGCTCCGGCGATTCCTTCTGTCTCGGCTCGTGCCGGTGGAAT 726 Query 707 CTTTCTCCCGTTGGTTAAATCTCTCTGTGTCGCTTGTGGTAGCAACGTTGGGGATGGAAC 766 ||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||| Sbjct 727 CTTTCTCCCGTTGGTGAAATCTCTCTGTGTTGCTTGTGGGAGTAACGTTGGGGATGGAAC 786 Query 767 TGAGCACCGTCTTGGCTCGTGGTTGATGCTCACTTGTTTCCAGACTTCTGTGATCTCTTC 826 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 787 AGAGCACCGTCTTGGCTCGTGGTTGATGCTTACTTGTTTCCAGACTTCTGTGATCTCTTC 846 Query 827 TTCTATGTTCTTGACGGCTATGGCTGCCAATCCTTTGAGTGCTAATCTGGCGTTTAACAC 886 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 847 TTCTATGTTCTTGACGGCTATGGCTGCGAATCCTTTGAGTGCTAATTTGGCGTTTAACAC 906 Query 887 GATCAAGCAGACGATTGGATGGACTGATTGGGCAAAAGCTGCGATTGTACCAGGACTTGT 946 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 907 GATTAAGCAGACGATTGGATGGACTGATTGGGCTAAAGCTGCGATTGTACCAGGACTTGT 966 Query 947 GTCTTTGATTGTTGTTCCGTTTCTTTTGTATCTTATCTATCCTCCTACGGTGAAGAGCAG 1006 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 967 GTCTTTGATTGTTGTTCCGTTTCTTTTGTATCTCATCTATCCTCCTACGGTGAAGAGCAG 1026 Query 1007 CCCTGATGCTCCCAAGCTGGCTCAGGAAAAGCTTGACAAGATGGGACCTATGTCTAAGAA 1066 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1027 TCCTGATGCTCCTAAGCTGGCTCAGGAAAAGCTTGACAAGATGGGACCTATGTCTAAGAA 1086 Query 1067 CGAGTTGATTATGGCCGCTACTTTGTTCCTCACGGTTGGTCTCTGGATTTTTGGAGCTAA 1126 ||| ||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1087 CGAATTGATTATGGCTGCCACTTTATTCCTCACGGTTGGTCTCTGGATCTTTGGAGCTAA 1146 Query 1127 GTTGAGTGTAGATGCTGTGACAGCAGCCATTCTTGGATTATCAGTCCTCCTTGTGACAGG 1186 |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1147 GTTGGGTGTAGATGCTGTGACTGCAGCCATTCTTGGATTATCAGTCCTTCTTGTGACAGG 1206 Query 1187 TGTTGTGACATGGAAAGAGTGCTTAGCTGAGTCAGTCGCATGGGACACACTCACCTGGTT 1246 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1207 TGTTGTGACATGGAAAGAGTGCTTAGCTGAGTCGGTCGCATGGGACACACTCACCTGGTT 1266 Query 1247 TGCTGCTCTCATTGCGATGGCTGGTTATCTTAACAAATATGGTCTCATTGAGTGGTTCAG 1306 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1267 CGCTGCTCTCATTGCGATGGCTGGTTATCTTAACAAATATGGTCTCATTGAGTGGTTCAG 1326 Query 1307 CCAGACCGTAGTCAAGTTTGTGGGAGGATTGGGTTTGTCATGGCAGCTATCATTTGGAAT 1366 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1327 CCAGACCGTAGTCAAGTTTGTGGGAGGATTGGGTTTGTCATGGCAGCTATCTTTTGGAAT 1386 Query 1367 CCTCGTCCTCTTGTATTTCTACACTCACTACTTCTTTGCCAGTGGAGCTGCTCACATTGG 1426 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1387 CCTCGTCCTCTTGTATTTCTACACTCACTACTTCTTTGCTAGTGGAGCTGCCCACATTGG 1446 Query 1427 AGCTATGTTCACTGCCTTTTTATCGGTCTCAACCGCTCTAGGCACTCCACCTTACTTTGC 1486 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1447 TGCTATGTTCACTGCCTTTTTATCGGTTTCAACCGCTCTAGGCACTCCACCTTACTTTGC 1506 Query 1487 AGCCTTGGTTCTTGCATTC-TTATCCAACCTGATGGGAGGATTGACTCATTATGGTATCG 1545 ||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||| Sbjct 1507 AGCCTTGGTTCTTGCGTTCCTT-TCCAACCTGATGGGAGGATTGACCCATTATGGTATCG 1565 Query 1546 GGTCTGCGCCTATCTTCTACGGGGCTAACTATGTGCCGTTGGCTAAATGGTGGGGCTATG 1605 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| Sbjct 1566 GGTCTGCGCCTATCTTCTACGGAGCTAACTACGTGCCGCTGGCTAAATGGTGGGGCTATG 1625 Query 1606 GATTCCTGATTTCAATAGTCAACATTCTTATCTGGCTTGGTGTAGGTGGTGCCTGGTGGA 1665 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1626 GATTCCTGATTTCAATAGTCAACATTCTCATCTGGCTTGGTGTAGGTGGTGCCTGGTGGA 1685 Query 1666 AGTTCATTGGCTTGTGGTGAGGACCACAACACACCAGTATTCCCATTCTTTTCCTTA-T- 1723 ||||||||||||||||||||||||||| | |||||| | |||||||||||||||||| | Sbjct 1686 AGTTCATTGGCTTGTGGTGAGGACCACCATACACCAATCTTCCCATTCTTTTCCTTACTT 1745 Query 1724 ATATATA-A-TCTCTTAGAACGGCTTTGAGATTCAGATTTGAGAAGGATT-AAACTCAGG 1780 ||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1746 ATATATATAATCTCTTAGAACGGCTTTGAGATTCAGATTTGAGAAGGATTGAAA-TCAGG 1804 Query 1781 GTTTTAAGGATTGAGCAGAGTTTTTCTGCAATTTTT 1816 ||| |||||||||||||||||||||||||||||||| Sbjct 1805 GTTATAAGGATTGAGCAGAGTTTTTCTGCAATTTTT 1840 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89858975550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5