BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940775
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13100.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1781 0.0
> AT5G13100.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:4156660-4158553
FORWARD LENGTH=1512
Length=1512
Score = 1781 bits (964), Expect = 0.0
Identities = 1061/1109 (96%), Gaps = 1/1109 (0%)
Strand=Plus/Plus
Query 1 TTTTGGTAATAATCTTTTAAGAAATGGGAAAGCTTTTGTGTGATTCCACGGCGACATTTC 60
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 107 TTTTGGCAATAATCTTTTAAGAAATGGGAAAGCTTTTGTGTGATTCAACGGCGACATTTC 166
Query 61 AATCTCCTTCACCAACGGTTCCTTGGAGAGAACCTTCTACAGCCGCAGTGTCTCTCGACG 120
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 167 AATCTCCTTCACCAACGGTTCCTTGGAGAGAACCTTCTACAGTCGCCGTGTCTCTCGAAG 226
Query 121 ATGTGGATCTTGTTGACCAATCCGCGGCTGCTGCGGCGGTGGAAGCGGTTGAGAAGACAA 180
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 227 ATGTAGATCTTGTTGACCAATCCGCGGCTGCTGCGGCGGTGGACGCGGTTGAGAAGACAA 286
Query 181 TGGCCGCCGCAACAACCACCGCGTGGGATGAGGTTTTTGGATTGGAGGAGTCGCAAAGAC 240
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 287 TGGCCGCCGCAACTACCACCGCTTGGGATGAGGTTTTTGGATTGGAGGAGGCGCAAAGAC 346
Query 241 GGCATCTGAGCCGGCTACACGCGAGGGGTGTGTTGTGGAAACATCCTGGGAAAGATGAAT 300
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 347 GGCATCTGAGCCGGCTACACGCGAGAGGTGTGTTGTGGAAACATCCTGGTAAAGATGAAT 406
Query 301 CCTCAGCTTCCGTCGTTTTCCGTCTCTCACACGGCGGAGAGGTTTCTTCCGACGGGAACT 360
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 407 CCTCTGCTTCCGTCGTTTTCCGTCTCTCTCACGGCGGAGAGGTTTCTTCCGACGGGAACT 466
Query 361 GTTTGTTCACGGCGTCTCAGAAGGCCATGGAGGCGCGTGGGATCGACGCGCGAGATCTAC 420
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 467 GTTTGTTCACCGCTTCTCAGAAGGCTATGGAGGCGCGTGGGATCGACGCGCGAGATTTAC 526
Query 421 GGCGGCGGACGGTGAGGAGGTTTTTGGAGGATTTCAGATCTGCTAGCGAGGAGGAGAAGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 527 GGCGGCGGACGGTGAGGAGGTTTTTGGAGGATTTCAGATCTGCTAGCGAGGAAGAGAAGG 586
Query 481 ACGTTATTACGGATGCGATTAGGCATATGTATTCGCCGGATCTGAAGAGTGGTTGGGGGA 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AGGTTATTACGGATGCGATTAGGCATATGTATTCGCCGGATCTGAAGAGTGGTTGGGGGA 646
Query 541 TTCATATTGTCCAAGAAGAGAAGTTGTTGGCGAAAAAAGATGATCGTGAGAGTCTAGATT 600
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 647 TTCATATTGTCCAGGAAGAGAAGTTGTTGGCGAAAAAAGATGAACGTGAGAGTCTTGATT 706
Query 601 CCGCCATTGAAGAGCTTATACAGATTGGGATGCAGAGAGAAACTGCAGCAGAGTCAATCT 660
||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||
Sbjct 707 CCGCCATTGAAGAGCTTTTACAGATTGGGATGCATAGAGAAACTGCTGCAGAGTCAATCT 766
Query 661 ACAGAGAGAGGTGTCTTCCGGTGAACGATGGACTTAGTTGGGCTAAGTACATGTCGATTT 720
| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 767 ATAGAGAGAGGTGTCTTCCGGTGAATGATGGACTTAGTTGGTCTAAGTACATGTCGATTT 826
Query 721 CAGGCTCAACAGAGGATGAGTATGATATTATTACCTTGCAGTATACGGAAGATGGGTTGT 780
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 827 CAGGCTCAACAGAGGATGAGTATGATATCATTACCTTGCAGTATACGGAAGATGGGTTGT 886
Query 781 TATCTGTAGAAGAGAACCGAGAAGGACATGCAGCTGCTTTTGGAGATGATATAGCAATTG 840
|||||||||| |||||||||||||||| ||||||||| ||||| ||||| |||||||| |
Sbjct 887 TATCTGTAGATGAGAACCGAGAAGGACGTGCAGCTGCGTTTGGGGATGACATAGCAATCG 946
Query 841 AATGTCTTGCCACAGAGTTCAAACGAGAAATCTATGTGGTGCAAGCGCATGGATCAGATG 900
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AGTGTCTAGCCACTGAGTTCAAACGAGAAATCTATGTGGTGCAAGCGCATGGATCAGATG 1006
Query 901 GGATGGTAGAGGAAGAGAACTGTGTGTTCTTCCTTCCTCACAAACCAAGAAGTGAAGTTC 960
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1007 GGATGGTAGAGGAAGAGAACTGTGTGTTCTTTCTTCCTCACAAACCAAGAAGTGAAGTTC 1066
Query 961 TTGAAGTCCCAGTCTTTCTTTTCATGAAAGGCACAGGTTGGTGTGGTGGCGGAGCAGACC 1020
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1067 TTGAAGTCCCAGTCTTTCTATTCATGAAAGGCACTGGTTGGTGTGGTGGTGGAGCAGACC 1126
Query 1021 ATTACGAGCCTTTGATTGCGAATCCATCTCCGCTGATATCTCATGAGAAAGTCGCCCTCG 1080
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1127 ATTACGAGCCCTTGATAGCGAATCCATCTCCTCTGATATCTCATGAGAAAGTCGCCCTCG 1186
Query 1081 TTCTCTAAATTTTG-AGCTTCTTCAAAAT 1108
|||||| ||||||| ||||||||||||||
Sbjct 1187 TTCTCTGAATTTTGGAGCTTCTTCAAAAT 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5