BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940781 Length=1413 Score E Sequences producing significant alignments: (Bits) Value AT5G13160.1 | Symbols: PBS1 | Protein kinase superfamily protei... 2346 0.0 AT3G24790.1 | Symbols: | Protein kinase superfamily protein | ... 198 1e-49 > AT5G13160.1 | Symbols: PBS1 | Protein kinase superfamily protein | chr5:4176579-4179885 FORWARD LENGTH=1849 Length=1849 Score = 2346 bits (1270), Expect = 0.0 Identities = 1367/1413 (97%), Gaps = 9/1413 (1%) Strand=Plus/Plus Query 1 TTGGGAAAATTGAGT---GGAGGAGATGGGTTGTTTCTCGTGTTTTGATTCGAGTGATGA 57 ||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| Sbjct 251 TTGGGAAAATTGAGTAAAGGAGGAGATGGGTTGTTTCTCGTGTTTTGATTCGA--G-TGA 307 Query 58 TGACGAGAAGCTGAATCCAGTTGTTGAATCT-A--ATGGTCAGAAGAAACAATCACAACC 114 ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 308 TGACGAGAAGCTGAATCCAGTTGATGAATCTAATCATGGTCAGAAGAAACAATCACAACC 367 Query 115 GACAGTATCCAATAACATTTCTGGACTTCCTTCAGGTGGGGAGAAGCTTAGCTCAAAGAC 174 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 368 GACAGTATCCAATAACATATCTGGACTCCCTTCAGGTGGGGAGAAGCTTAGCTCAAAGAC 427 Query 175 CAATGGAGGATCAAAAAGGGAGCTACTGCTTCCAAGGGATGGGCTTGGACAAATTGCTGC 234 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 428 CAATGGAGGATCAAAAAGGGAGCTACTGCTTCCAAGGGATGGACTTGGACAAATTGCTGC 487 Query 235 TCATACATTTGCTTTCCGCGAGCTTGCTGCTGCAACTATGAACTTTCATCCTGACACTTT 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 TCATACATTTGCTTTCCGCGAGCTTGCTGCTGCAACTATGAACTTTCATCCTGACACTTT 547 Query 295 CTTAGGCGAAGGTGGATTTGGACGTGTCTACAAAGGAAGGCTTGACAGCACCGGTCAGGT 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 CTTAGGCGAAGGTGGATTTGGACGTGTCTACAAAGGAAGGCTTGACAGCACCGGTCAGGT 607 Query 355 TGTTGCTGTTAAACAACTGGACAGGAATGGTCTACAAGGTAACAGAGAATTTCTGGTAGA 414 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 608 TGTTGCTGTTAAACAACTAGACAGGAATGGTCTACAAGGTAACAGAGAATTTCTGGTAGA 667 Query 415 GGTTCTTATGCTCAGTCTTCTTCATCATCCCAACTTAGTCAACCTTATTGGTTATTGTGC 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 668 GGTTCTTATGCTCAGTCTTCTTCATCATCCCAACTTAGTCAACCTTATTGGTTATTGTGC 727 Query 475 TGATGGAGATCAACGCCTCTTAGTTTACGAGTTTATGCCGTTAGGATCATTGGAAGATCA 534 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 728 TGATGGAGATCAACGCCTCTTGGTCTACGAGTTTATGCCGTTAGGATCATTGGAAGATCA 787 Query 535 CCTCCACGATCTTCCACCGGATAAGGAGGCCTTAGATTGGAACATGAGAATGAAAATAGC 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 788 CCTCCACGATCTTCCACCGGATAAGGAGGCCTTAGATTGGAACATGAGAATGAAAATAGC 847 Query 595 TGCTGGTGCGGCGAAAGGATTGGAATTTCTACATGATAAGGCAAACCCTCCGGTTATTTA 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 848 TGCTGGTGCGGCGAAAGGATTGGAATTTCTACATGATAAGGCAAACCCTCCGGTTATTTA 907 Query 655 TAGAGATTTTAAGTCATCAAACATTTTACTGGATGAGGGTTTCCACCCAAAACTTTCTGA 714 ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 908 TAGAGATTTTAAGTCATCAAATATTTTACTGGATGAGGGTTTCCACCCTAAGCTTTCTGA 967 Query 715 TTTTGGGCTTGCTAAACTGGGACCAACGGGAGACAAATCTCATGTCTCCACTAGAGTTAT 774 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 968 TTTTGGACTTGCTAAACTCGGACCAACGGGAGACAAATCTCATGTCTCCACTAGAGTTAT 1027 Query 775 GGGAACTTATGGTTATTGTGCTCCCGAATACGCAATGACGGGACAATTGACAGTAAAATC 834 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1028 GGGAACTTATGGTTATTGTGCTCCCGAGTACGCAATGACGGGACAATTGACAGTAAAATC 1087 Query 835 AGATGTATACAGTTTTGGTGTGGTTTTTCTCGAGCTCATTACTGGTCGCAAAGCTATAGA 894 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1088 AGATGTCTACAGTTTTGGTGTGGTTTTTCTCGAGCTCATTACTGGTCGCAAAGCTATAGA 1147 Query 895 CAGCGAGATGCCTCATGGAGAGCAGAACCTGGTGGCTTGGGCTCGCCCATTGTTCAACGA 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1148 CAGCGAGATGCCTCATGGAGAGCAGAACCTGGTGGCTTGGGCTCGCCCATTGTTCAACGA 1207 Query 955 CAGGCGAAAGTTCATAAAACTGGCGGATCCAAGGTTAAAGGGGCGGTTTCCAATGCGTGC 1014 |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 1208 CAGGCGAAAGTTCATAAAACTGGCTGATCCAAGGTTAAAGGGGCGGTTTCCAACGCGTGC 1267 Query 1015 ACTCTACCAAGCTTTAGCTGTGGCTTCAATGTGCATCCAAGAGCAGGCGGCTACACGTCC 1074 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1268 ACTCTACCAAGCTTTAGCTGTGGCATCAATGTGCATCCAAGAACAGGCGGCTACACGTCC 1327 Query 1075 TCTCATAGCAGATGTTGTCACTGCACTCTCTTATCTTGCAAACCAAGGTTATGATCCAAG 1134 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1328 TCTCATAGCAGATGTTGTCACTGCACTCTCCTATCTTGCAAACCAAGCTTATGATCCAAG 1387 Query 1135 CAAAGATGACAGTAAAAGAAACCGAGATGAAAGAGGGGCGAGGTTAATAACAAGAAACGA 1194 |||||||| |||| ||||||||| ||||||||||| || |||||||||||||| ||||| Sbjct 1388 TAAAGATGATAGTAGAAGAAACCGGGATGAAAGAGGTGCAAGGTTAATAACAAGGAACGA 1447 Query 1195 CGATGGAGGTGGCTCGGGAAGTAAATTCGACCTAGAAGGTTCCGAGAAAGAAGATTCGCC 1254 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || Sbjct 1448 CGATGGAGGTGGCTCGGGAAGTAAATTCGATTTAGAAGGTTCAGAGAAAGAAGATTCACC 1507 Query 1255 AAGAGAGACAGCTCGGATATTGAACCGAGATATCAACAGGGAGCGTGCAGTTGCAGAGGC 1314 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1508 GAGAGAGACAGCTCGGATATTGAACCGAGATATCAATAGGGAGCGTGCGGTTGCAGAGGC 1567 Query 1315 TAAAATGTGGGGGGAGAGTTTGAGGGAGAAACGAAGACAGAGCGAGCAGGGTACTTCAGA 1374 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1568 TAAGATGTGGGGAGAGAGTTTGAGGGAGAAACGAAGACAGAGCGAGCAGGGTACTTCAGA 1627 Query 1375 GAGCAACAGTACCGGGTAGAACCGGTTTGAGTC 1407 ||||||||||||||||||||||||||||| ||| Sbjct 1628 GAGCAACAGTACCGGGTAGAACCGGTTTGGGTC 1660 > AT3G24790.1 | Symbols: | Protein kinase superfamily protein | chr3:9052982-9054531 FORWARD LENGTH=1106 Length=1106 Score = 198 bits (107), Expect = 1e-49 Identities = 426/574 (74%), Gaps = 46/574 (8%) Strand=Plus/Plus Query 302 GAAGGTGGATT-TGGACGTGTCTACAAAGGAAGGCTTG-ACAGCACCGGTCAGGTTGTTG 359 |||||||| || ||| | || |||||||||| ||||| | | | | | |||||| || | Sbjct 177 GAAGGTGGGTTCGGGA-GGGTTTACAAAGGAAAGCTTGAAAATC-CAGCTCAGGTCGTGG 234 Query 360 CTGTTAAACAACTGGACAGGAATGG-TCTACAAGGTAACAGAGA-ATTTC-TGGTAGAGG 416 | || |||||||| || |||||||| | ||||||| ||| ||| | ||| |||| |||| Sbjct 235 CAGTGAAACAACTTGATAGGAATGGAT-TACAAGG--ACAAAGAGAGTTCTTGGTCGAGG 291 Query 417 TTCTT-ATGCTCAGTCTTCTTCATCATCCCAA-CTTAGTCAACCTTATTGGTTATTGTGC 474 |||| ||||| |||||||| |||||| || ||| || || ||||| |||||||| || Sbjct 292 -TCTTAATGCTTAGTCTTCTACATCATAGGAATCTT-GTGAATCTTATCGGTTATTGCGC 349 Query 475 TGATGGAGATCAACG-CCTCTTAGTTTACGAGTTTATGCCGT-TAGGATCAT-TGGAAGA 531 ||||||||| ||| | | |||| |||||||||| |||||| | | ||||| | | ||||| Sbjct 350 TGATGGAGACCAAAGACTTCTT-GTTTACGAGTATATGCC-TCTTGGATC-TCTAGAAGA 406 Query 532 TCACCTCCACGATCTTCCACC-GGATAAGGAGGCC-TTAGATTGGAACA-TGAGAATGAA 588 ||| |||| ||||||| ||| ||| || | || |||| ||||||| | | || || Sbjct 407 TCATCTCCTCGATCTTGAACCGGGACAA--AAACCACTAGACTGGAACACT-CGTATTAA 463 Query 589 AATAGCTGCT-GGTGCGGCGAAAGG-ATTGGAATTTCTACATGATAAGGCAAACCCTCCG 646 || ||| | || || || ||||| ||| || | ||| |||||| |||| | ||||| Sbjct 464 GATTGCT-TTAGGAGCAGCAAAAGGAATT-GAGTATCTCCATGATGAGGCTGATCCTCCA 521 Query 647 GTTATTTATAGAGATTTTAAGTCATCAAACATTTTACTGGA-TGAGGGTTTCCACCCAAA 705 || ||||| ||||| |||| || ||||| || ||||| || | | | | | || Sbjct 522 GTGATTTACCGAGATCTTAAATCGTCAAATATATTACTTGACCCA-GAATACGTTGCGAA 580 Query 706 ACTT-TCTGATTTTGGGCTT-GCTAAA-CTGGGACCAACGGGAGACAAATCT-CATGTCT 761 | || || || ||| || || || ||| || || || ||||||| | || ||||| | Sbjct 581 A-TTATCGGA-TTTCGGTTTAGC-AAAGCTAGGTCCTGTTGGAGACACA-CTACATGTGT 636 Query 762 CCACTAGAGTTATGGGAACTTATGGTTATTGTGCTCCCGAATACGCAATGA-CGGGACAA 820 | | ||||||||||||||||||||||||||||||| ||||| ||| || | || | | Sbjct 637 CTTCCCGAGTTATGGGAACTTATGGTTATTGTGCTCCTGAATAT-CAAAGAACTGG-CTA 694 Query 821 T-TGACAG-TAAAATCAGATGTATACAGTTTTGG 852 | | ||| |||| |||||||| ||||| ||||| Sbjct 695 TCTAACAAATAAA-TCAGATGTCTACAGCTTTGG 727 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69628155915 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5