BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940836
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13710.1 | Symbols: SMT1, CPH | sterol methyltransferase 1 |... 1694 0.0
> AT5G13710.1 | Symbols: SMT1, CPH | sterol methyltransferase 1
| chr5:4423695-4427058 REVERSE LENGTH=1473
Length=1473
Score = 1694 bits (917), Expect = 0.0
Identities = 992/1029 (96%), Gaps = 2/1029 (0%)
Strand=Plus/Plus
Query 1 TCCGTTGTTGCACAAGTGCCATGGATCTCGCGTCGAATCTAGGTGGCAAGATCGATAAAT 60
|||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 90 TCCGTTGTTGCATAAGTGCTATGGATCTCGCGTCGAATCTTGGTGGGAAGATCGATAAAT 149
Query 61 CCGATGTTCTCACAGCCGTCGAAAAGTATGAGCAATATCATGTCTTCCATGGAGGAAACG 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 CCGATGTTCTCACCGCCGTCGAAAAGTATGAGCAATATCATGTCTTCCATGGAGGAAACG 209
Query 121 AGGAAGAGAGAAAAGCAAATTACACTGACATGGTTAATAAGTACTATGACCTTGCTACTA 180
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 210 AGGAAGAGAGAAAAGCCAATTATACTGACATGGTTAATAAGTACTATGACCTTGCTACTA 269
Query 181 GCTTTTATGAGTATGGATGGGGAGAATCCTTCCATTTTGCACACAGATGGAAAGGAGAAT 240
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 270 GCTTTTATGAGTACGGATGGGGAGAATCCTTCCATTTTGCACAAAGATGGAAAGGAGAAT 329
Query 241 CGCTTCGAGAGAGTATTAAGCGACACGAGCACTTTCTTGCTCTTCAGCTTGGCATCAAAC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 330 CGCTTCGAGAGAGTATTAAGCGACACGAGCACTTTCTTGCTCTTCAGCTTGGCATCCAAC 389
Query 301 CAGGACACAAGGTACTGGATGTAGGATGTGGAATTGGTGGACCGCTGAGAGAAATTGCAC 360
||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 390 CAGGACAAAAGGTACTGGATGTAGGATGTGGAATTGGTGGACCGTTGAGGGAAATTGCAA 449
Query 361 GTTTCAGCAATTCA-TCTGTTACCGGGCTCAACAATAACGAATACCAGATCACCAGAGGC 419
| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GATTCAGCAATTCAGT-TGTTACCGGGCTCAACAATAACGAATACCAGATCACCAGAGGC 508
Query 420 AAGGAACTAAACCGACTTGCAGGTGTCGACAAGACATGTAACTTTGTCAAGGCTGACTTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 AAGGAACTAAACCGACTTGCAGGTGTCGACAAGACATGTAACTTTGTCAAGGCTGACTTC 568
Query 480 ATGAAGATGCCATTCCCTGAAAACAGTTTTGATGCAGTTTATGCAATAGAAGCAACCTGC 539
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 569 ATGAAGATGCCATTCCCGGAAAACAGTTTCGATGCAGTTTATGCAATAGAAGCAACTTGC 628
Query 540 CACGCACCTGATGCGTATGGATGCTACAAAGAGATCTACAGAGTGCTAAAGCCCGGGCAA 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 629 CATGCACCTGATGCGTATGGATGCTACAAAGAGATCTACAGAGTGCTAAAGCCTGGGCAA 688
Query 600 TGTTTTGCTGCCTATGAGTGGTGCATGACTGATGCATTTGACCCTGATAACGCTGAACAT 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 689 TGTTTTGCTGCCTATGAGTGGTGTATGACTGATGCATTTGACCCTGATAACGCCGAACAT 748
Query 660 CAGAAGATAAAGGGAGAGATAGAGATTGGAGATGGTCTGCCTGACATTAGGCTGACTACA 719
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 749 CAGAAAATAAAGGGAGAGATAGAGATTGGAGATGGTCTTCCTGACATTAGGCTGACTACA 808
Query 720 AAATGCCTTGAAGCTCTGAAGCAGGCCGGTTTTGAAGTAATATGGGAAAAGGATCTGGCC 779
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 809 AAATGCCTCGAAGCTCTGAAGCAGGCCGGTTTTGAAGTGATATGGGAAAAGGATCTGGCC 868
Query 780 AAGGACTCGCCGATCCCTTGGTACTTGCCTCTGGACAAAAATCATTTTTCGCTTAGTAGC 839
|||||||||||| |||| |||||||| ||||| |||||||||||||| || || ||||||
Sbjct 869 AAGGACTCGCCGGTCCCATGGTACTTACCTCTTGACAAAAATCATTTCTCACTCAGTAGC 928
Query 840 TTCCGCCTAACAGCTGTTGGACGATTCATAACCAAAAACATGGTCAAGATCCTTGAATAC 899
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 TTCCGCCTTACAGCTGTTGGACGATTCATAACCAAAAACATGGTCAAGATCCTTGAATAC 988
Query 900 ATAAGACTCGCACCTCAAGGAAGCCAAAGGGTCTCAAATTTCCTGGAGCAGGCTGCGGAA 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 ATAAGACTTGCACCTCAAGGAAGCCAAAGGGTCTCAAATTTCCTGGAGCAGGCTGCGGAA 1048
Query 960 GGATTAGTCGACGGTGGAAGGAGAGAGATTTTCACGCCAATGTATTTCTTCTTGGCCCGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GGATTAGTCGACGGTGGAAGGAGAGAGATTTTCACGCCAATGTATTTCTTCTTGGCCCGG 1108
Query 1020 AAGCCAGAG 1028
|||||||||
Sbjct 1109 AAGCCAGAG 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52258767345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5