BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940842
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13770.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2924 0.0
> AT5G13770.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:4445423-4447476 FORWARD LENGTH=2054
Length=2054
Score = 2924 bits (1583), Expect = 0.0
Identities = 1779/1875 (95%), Gaps = 7/1875 (0%)
Strand=Plus/Plus
Query 1 CTTcacacacacacacacacTCATGGCCATCGCGAGCGGGTCGTGGGTAGCCACCGTGAA 60
||||||||||||| | ||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 19 CTTCACACACACAGATACA--CATGGCCATCGCGAGCGGGTCATGGGTAGCCACTGTGAA 76
Query 61 CCACCATGCAAATCCCCACAGCTTCACCTCTCCGACCAAACCCATTTTCTTTCTTTCCCA 120
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 77 CCACCATGCTAATCCCCACAGCTTCACTTCTCCGACCAAACCCATTTTCTTTCTTTCTCA 136
Query 121 AAAGCCTCACAATTTCCATGTCTGCTCCTCTCGATGCTCTATGGTTCTTGAGGAAGATGA 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 137 AAAGCCTCACAATTTCCATGTCTGCTCGTCTCGATGCTCTATGGTTCTTGAGGAAGATGA 196
Query 181 AAAGAAGTCACCGAGTCCCAAAGAAGACAAGTGGCCATTTCTTGAGCCTGGTCCGGATGA 240
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 197 AAAGAAGTCACCGAGTCCTAAAGAAGACAAGTGGCCATTTTTTGAACCTGGTCCGAATGA 256
Query 241 CCTTAACCGGGTCTTATCCAGGTTTCTCCGAGACCTGGAAACTCGGAAACTTTCTTCTGA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 257 CCTTAACCGGGTCTTATCCAGGTTTCTCCGAGACCCGGAAACTCGGAAACTTTCTTCTGA 316
Query 301 ATTCTACGAGAAGGCAAAGGAGAACTCTGAGTTGAGGACGACCAAGCATCTGATCAA-TT 359
|||||||||||| || |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 317 ATTCTACGAGAAAGCTAAGGAGAACTCTGAGTTGAGAACGACCAAGCATCTGAT-AAGTT 375
Query 360 ACTTGGTGAGTTCCAAGAATTGGAACTTGCTCGTCTC-GCTTTGTGAGGATCTCAGGGAA 418
|||||||||||||||||| |||| ||||||| || || | ||||||||||||||||||||
Sbjct 376 ACTTGGTGAGTTCCAAGAGTTGGGACTTGCTTGTTTCTG-TTTGTGAGGATCTCAGGGAA 434
Query 419 CATAAAGCATTGCCTGATGCACAAACGTGTTCGAATCTGATCAGAAGTTGCATCAGAGAG 478
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 435 CATAAAGCATTGCCTGATGGGCAAACGTGTTCGAATCTGATCAGGAGTTGCATCAGAGAT 494
Query 479 AGAAAATTCCGAATTACACATTGCTTGCTTAGCGTGTTTAGATCAGACAAATCATTGGCG 538
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AGGAAATTCCGAATCACACATTGCTTGCTTAGCGTGTTTAGATCAGACAAATCATTGGCG 554
Query 539 GTGTCTGCATCTGATGCAGCGATGAAAGGCTTTAACAAACTCCAGATGTATAGTAGCACG 598
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 GTATCTGCATCTGATGCAGCGATGAAAGGCTTTAACAAACTCCAGATGTATAGTAGCACC 614
Query 599 ATTCAAGTGTTTGATAGGTTGAAACAATCTGTCGGAGTTGAGCCAAGCCCGAGCTGTTAT 658
|||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 615 ATTCAAGTATTTGATAGGTTGAAACAATCTGTGGGAGTTGAGCCAAGCCCGGGTTGTTAT 674
Query 659 TGCAGGATAATGGAGGCTCATGAGAAGATTGGTGACAATCAAAAGGTGGTTGAGTTATTT 718
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 675 TGCAGGATAATGGAGGCTCATGAGAAGATTGGTGAAAATCACAAGGTGGTTGAGTTGTTC 734
Query 719 CAAGAGTTTAAGAGTCAGAGGTTGAGTTTCTTGGCCAAGGAATCAGGCAGTATCTACACG 778
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 735 CAAGAGTTTAAGAGTCAGAGGTTGAGTTTCTTGGCCAAGGAATCAGGCTCTATCTACACG 794
Query 779 ATTGTATGCTCGTCCCTTGCAAAATCAGGACGGGCATTCCAAGCTCTAGAGGTTTTGGAG 838
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 795 ATTGTATGCTCGTCCCTTGCAAAATCAGGACGTGCATTCGAAGCTCTAGAGGTTTTGGAG 854
Query 839 GAGATGAAGGATAAAGGAATTCCAGAAAGTAGTGAATTGTACTCTATGCTGATCCGTGCC 898
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 855 GAGATGAAAGATAAAGGAATTCCGGAGAGTAGTGAATTGTACTCTATGCTGATCCGTGCA 914
Query 899 TTTGCGGAAGCACGAGAGGTTGTAATAACCGAGAAGCTTTTCAAAGAAGCAGGAGGGAAG 958
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 915 TTTGCGGAAGCGCGGGAGGTTGTAATAACCGAGAAGCTATTCAAAGAAGCAGGAGGGAAG 974
Query 959 AAACTGTTGAAGGATCCTGAAATGTGTTTGAAGGTTGTACTGATGTATGTCCGAGAAGGA 1018
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 975 AAACTGTTAAAGGATCCTGAAATGTGTTTGAAGGTTGTACTCATGTATGTCCGAGAAGGA 1034
Query 1019 AAAATGGAGAGAACTCTAGAGGTTGTGGCAGCGATGAGAAAGGCCGAATTAAAGGTCACT 1078
|| ||||||| |||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1035 AATATGGAGACAACTCTAGAGGTTGTGGCGGCGATGAGAAAGGCTGAGTTAAAGGTCACT 1094
Query 1079 GACTGCATACTCTGCGCGATTGTGAATGGATTCTGTAAGCAAAGAGGTTTTGCTGAAGCA 1138
|| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1095 GATTGCATACTCTGTGCGATTGTGAATGGATTCAGTAAGCAAAGAGGCTTTGCTGAAGCA 1154
Query 1139 ATTAAGGTTTATGAATGGGCTATGAAGCAAGAATGTGAGGCTGGGCAAGTGACTTACGCA 1198
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1155 GTTAAGGTTTATGAATGGGCTATGAAGGAAGAATGTGAGGCTGGGCAAGTGACTTATGCA 1214
Query 1199 ATAGCCATCAATGCATACTGTCGGCTTGAGAAGTACGATAAGGCTGAGATGTTGTTTGAT 1258
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1215 ATAGCCATCAATGCATACTGTCGGCTTGAGAAGTACAATAAGGCTGAGATGTTGTTTGAT 1274
Query 1259 GAGATGGTGAAGAAGGGGTTTGACAAATGTGTTGTTGCATATTCAAACATAATGGATATG 1318
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1275 GAGATGGTGAAGAAGGGGTTTGATAAGTGTGTTGTTGCATACTCAAACATAATGGATATG 1334
Query 1319 TATGGGAAAACACAGAGGCTAAGCGATGCAGTGAAACTCATGGCTAAGATGAAACAAAGA 1378
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1335 TATGGGAAAACACGGAGACTAAGCGATGCAGTGAGACTCATGGCTAAGATGAAACAAAGA 1394
Query 1379 GGGTGTAAACCCAACATTTGGATTTACAATTCCTTAATTGATATGCATGGAAGGGCTAAG 1438
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1395 GGGTGTAAACCCAACATTTGGATTTACAATTCCTTGATTGATATGCATGGAAGGGCTATG 1454
Query 1439 GACTTAAGGCGGGCTGAAAAGATATGGAAAGAGATGAAGAGGGCGAAGGTGTTGCCAGAC 1498
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1455 GACTTAAGGAGGGCTGAAAAGATATGGAAAGAGATGAAGAGGGCGAAGGTGTTGCCGGAC 1514
Query 1499 AAGGTGAGTTACACTAGTATGATCAGTGCATATAATAGAGCAAAAGAGTTGGAGAAATGT 1558
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||
Sbjct 1515 AAGGTGAGTTACACTAGTATGATCAGTGCATATAACAGATCAAAAGAGTTGGAGAGATGT 1574
Query 1559 GTGGAGCTTTACCAGGAGTTTAGGATGAACAGAGGAAAGATCGATAGGGCTATGGCAGGA 1618
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1575 GTGGAGCTTTACCAGGAGTTTAGGATGAACAGAGGAAAGATTGATAGGGCCATGGCAGGA 1634
Query 1619 ATAATGGTAGGTGTATTCTCCAAAACCAGTAGGATTGATGAGCTGATGAGGCTGTTGCAG 1678
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1635 ATCATGGTCGGTGTATTCTCCAAAACCAGTAGGATTGATGAGCTAATGAGGCTGTTGCAG 1694
Query 1679 GACATGAAAGTTGAAGGAACCAGGCTTGATGCGAGGCTTTATTCCTCAGCTTTGAATGCT 1738
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1695 GACATGAAAGTTGAAGGAACCAGGCTTGATGCTAGGCTTTATTCCTCAGCTTTGAATGCT 1754
Query 1739 CTGCGTGATGCTGGTCTCAATTCCCAGATCAGATGGCTACAGGAAAGCTTTGATGCTGCA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1755 CTGCGTGATGCTGGTCTCAATTCCCAGATCAGATGGCTACAGGAAAGCTTTGACGCTGCA 1814
Query 1799 CAAACTAGTGTTTCAAGATATTCGAATACGAAGAACACAAGAACTATCAGTTGAAAGGGA 1858
||||||||| ||||| |||||||||||| ||||||||| ||||| | ||||||||||||
Sbjct 1815 CAAACTAGTACTTCAAAATATTCGAATACAAAGAACACAGGAACTTTAAGTTGAAAGGGA 1874
Query 1859 AA-CTGTACAAGCCA 1872
|| ||||||||||||
Sbjct 1875 AAACTGTACAAGCCA 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5