BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940846
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13810.1 | Symbols: | Glutaredoxin family protein | chr5:44... 1199 0.0
> AT5G13810.1 | Symbols: | Glutaredoxin family protein | chr5:4455333-4457019
FORWARD LENGTH=1585
Length=1585
Score = 1199 bits (649), Expect = 0.0
Identities = 792/859 (92%), Gaps = 17/859 (2%)
Strand=Plus/Plus
Query 4 TTCTTTGATCTGGTTTCGATGGCGGGATTAGACAAAAA--C-G----CT--GGG-A-A-G 51
||||||||||| ||||||||||||||||||| ||||| | | || ||| | | |
Sbjct 317 TTCTTTGATCTAATTTCGATGGCGGGATTAGAGAAAAACGCTGATTTCTCAGGGAAGACG 376
Query 52 ACGAAATCGGCTACGACGTCTTCGTTTTTCAACAGGTCGCTTACAATTCACGGGAGAACA 111
|||||||||||||| ||| | ||||| |||||||||||||||||||||||||| ||||||
Sbjct 377 ACGAAATCGGCTACAACGACGTCGTTCTTCAACAGGTCGCTTACAATTCACGGAAGAACA 436
Query 112 GTGGTGGATTCGAGCCCCAAATCCCACAATCTCAATCCTTCTCTCAATCGTACCACCTCC 171
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GTGGTGGATTCGGGCCCCAAATCCCACAATCTCAATCCTTCTCTCAATCGTACCACCTCC 496
Query 172 ATTACCAAATTCTACACCCCCGTGGAATCTATGGGAAGTTCTCTTAAAGGCAAAGTCAAA 231
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 497 ATTACCAAATTCTACACCCCCGTAGAATCGATGGGAACTTCTCTTAAAGGCAAAGTCAAA 556
Query 232 AACCTTTGTAGATTATTTGAGAGTTCCAAACCCGTTAAACCAGCCTCCGCTGAGATTCCT 291
||||||||||||||||| |||| |||||||||||||||||| |||| ||||||||||||
Sbjct 557 AACCTTTGTAGATTATTCGAGACTTCCAAACCCGTTAAACCTGCCTTAGCTGAGATTCCT 616
Query 292 CAAAAGCAGAAATCCGGCAAATCTCTTTTACCCGAATCGCGGATATCGCCTTTTTTC-AG 350
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 617 CAGAAGCAGAAATCCGGTAAATCCCTTTTACCCGAATCGCGGATATCGCCTTTTT-CGAG 675
Query 351 CTTAAACAACTCGGTGATCCGTCTTCCCGGGACAGAGGACAGGATTGTGGTGTATTTTAC 410
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CTTAAACAACTCGGTCATCCGTCTTCCCGGGACAGAGGACAGGATTGTGGTGTATTTTAC 735
Query 411 TAGCTTGAGAGGGATTAGGCGGACATATGAGGATTGCTATGCTGTGAGAATGATTTTTAG 470
|||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 736 TAGCTTGAGAGGGATTAGACGGACGTATGAGGATTGCTATGCTGTCAGAATGATATTTAG 795
Query 471 AGGGTTTCGGGTTTGGATAGATGAGCGTGATGTCTCCATGGATATAGCTTACAGGAAAGA 530
|||||||||||||||||| |||||||| || |||||||||||||| ||||| ||||||||
Sbjct 796 AGGGTTTCGGGTTTGGATCGATGAGCGCGACGTCTCCATGGATATCGCTTATAGGAAAGA 855
Query 531 GTTGCAGATTGCAATGGGAGAGAAGAGTGTGTCTTTGCCTCAAGTTTTCATCATGGGAAA 590
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 856 GTTGCAGATTGCAATGGGAGAGAAGTCTGTGTCTTTGCCTCAAGTTTTCATTATGGGCAA 915
Query 591 ATATGTGGGTGGTGCTGATGTGATCAAGAGTTTGTTCGAGATTGGCGAGCTCGCCAAGAT 650
||||| ||||||||||||||||||||||||||||| |||||||| ||||| || |||||
Sbjct 916 GTATGTTGGTGGTGCTGATGTGATCAAGAGTTTGTTTGAGATTGGTGAGCTTGCTAAGAT 975
Query 651 TCTTAAAGAGTTTCCGATGAGACAACCAGGGTTTGTTTGCCATTGCTGCGGGGACAT-CA 709
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 976 TCTTAAAGAGTTTCCAATGAGACAACCAGGGTTTGTTTGCCATTGCTGTGGGGACATTC- 1034
Query 710 GATTCGTTCCGTGTTCCAATTGTAGTGGGAGCAAGAAACTGTTTGATGAGGATGAAGATA 769
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1035 GATTTGTTCCGTGTTCCAATTGTAGTGGCAGCAAGAAACTGTTTGATGAGGATGAAGATA 1094
Query 770 GGCTCAAGAGATGTCCCGACTGCAATGAGAATGGATTGATACGTTGTCCTCATTGCTCAT 829
|| ||||||||||||| || |||||||||||||||||||||||||||||| ||||||| |
Sbjct 1095 GGGTCAAGAGATGTCCTGAATGCAATGAGAATGGATTGATACGTTGTCCTGATTGCTCTT 1154
Query 830 CTTGAGAGATATCAATCAA 848
||||||| |||||| ||||
Sbjct 1155 CTTGAGATATATCA-TCAA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5