BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940873
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14040.1 | Symbols: PHT3;1 | phosphate transporter 3;1 | chr... 1901 0.0
> AT5G14040.1 | Symbols: PHT3;1 | phosphate transporter 3;1 | chr5:4530643-4533070
REVERSE LENGTH=1649
Length=1649
Score = 1901 bits (1029), Expect = 0.0
Identities = 1126/1171 (96%), Gaps = 13/1171 (1%)
Strand=Plus/Plus
Query 2 TCCTCCCTCCGCCGCCGCGATGGAATCTCCGAAGAATTCTCTGATCCCGAGCTTCCTCTA 61
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 87 TCCTTCCTCCGCCGCCGCCATGGAATCTCCGAAGAATTCTCTGATCCCGAGCTTCCTCTA 146
Query 62 TTCATCATCTTCATCCCCGAGATCCTTCCTCCTCGACCAGGTGCTGAATTCCAACTCCAA 121
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 147 TTCATCATCTTCATCTCCGAGATCTTTCCTCCTCGACCAGGTGCTCAATTCCAACTCCAA 206
Query 122 CGCTGCATTC--G-CCTCCTCCAATCT-CGAG-AAATC--TCCTTCTCCGACGTCGATGA 174
|||||||||| | | |||| ||| || | | ||| ||||| ||||||||||
Sbjct 207 CGCTGCATTCGAGAAAT-CTCC-TTCTCCG-GCCCCGCGTTCC-TCTCCTACGTCGATGA 262
Query 175 TTTCTCGGAAGAATTTCCTTATTGCGTCTCCCACCGAGCCAGGGAAGGGGATCGAGATGT 234
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 263 TTTCTCGGAAGAATTTCCTTATTGCATCTCCCACCGAGCCAGGGAAGGGGATCGAGATGT 322
Query 235 ATTCACCTGCCTTCTACGCTGCTTGTACCTTCGGTGGAATTCTCAGCTGTGGTCTCACTC 294
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 323 ATTCACCTGCCTTCTACGCTGCTTGTACCTTTGGTGGAATTCTCAGCTGTGGTCTTACTC 382
Query 295 ACATGACCGTGACTCCTCTCGATCTCGTCAAGTGCAATATGCAGATTGATCCAGCGAAGT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 ACATGACCGTGACTCCTCTCGATCTCGTCAAGTGCAATATGCAGATTGATCCAGCGAAGT 442
Query 355 ACAAGAGCATTTCTTCTGGTTTTGGAATTTTGCTGAAAGAGCAAGGTGTCAAAGGCTTTT 414
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 443 ACAAGAGCATCTCGTCTGGTTTTGGAATTTTGCTGAAAGAGCAAGGAGTCAAAGGCTTTT 502
Query 415 TCCGTGGATGGGTTCCTACTCTGTTGGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGAT 474
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 503 TCCGTGGATGGGTTCCTACTCTTTTGGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGAT 562
Query 475 TCTACGAGTACTTTAAGAAGACTTACTCTGACCTTGCTGGACCTGAGTACACTGCCAAAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TCTACGAGTACTTTAAGAAGACTTACTCTGACCTTGCTGGACCTGAGTACACTGCCAAAT 622
Query 535 ACAAAACTCTCATCTACCTTGCTGGTTCTGCTTCTGCTGAGGTCATTGCCGATATTGCAC 594
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 623 ACAAGACTCTCATCTACCTTGCTGGTTCTGCTTCTGCTGAGATCATTGCCGATATTGCAC 682
Query 595 TTTGCCCATTTGAAGCTGTGAAGGTTCGTGTTCAGACACAGCCTGGATTTGCTAGGGGGA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TTTGCCCATTTGAAGCTGTGAAGGTTCGTGTTCAGACACAGCCTGGATTTGCTAGGGGGA 742
Query 655 TGTCTGATGGATTTCCCAAGTTTATCAAGTCTGAAGGATACGGAGGCTTGTATAAGGGTC 714
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 743 TGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGCTTGTATAAGGGTC 802
Query 715 TTGCTCCACTCTGGGGACGTCAGATTCCTTACACTATGATGAAGTTTGCTTCCTTTGAGA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TTGCTCCACTCTGGGGACGTCAGATTCCTTACACTATGATGAAGTTTGCTTCCTTTGAGA 862
Query 775 CCATTGTTGAGATGATCTACAAGTACGCAATCCCCAACCCGAAGAGTGAGTGCAGCAAAG 834
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 863 CCATTGTTGAGATGATTTACAAGTACGCAATCCCCAACCCAAAGAGTGAGTGCAGCAAAG 922
Query 835 GTCTACAACTCGGGGTGAGTTTTGCAGGAGGTTACGTTGCCGGAGTGTTCTGTGCAATCG 894
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 923 GTCTGCAACTCGGAGTGAGTTTTGCCGGAGGTTACGTTGCCGGAGTGTTCTGTGCCATCG 982
Query 895 TTTCTCATCCAGCAGACAATCTGGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTG 954
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 983 TTTCTCATCCAGCAGACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTG 1042
Query 955 GAGATGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTAAGAA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1043 GAGATGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTTAGAA 1102
Query 1015 TTGTGATGATCGGGACATTGACTGGAGCACAGTGGGGATTATACGATGCCTTCAAAGTGT 1074
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TTGTGATGATCGGGACGTTGACTGGAGCACAGTGGGGATTATACGATGCCTTCAAAGTGT 1162
Query 1075 TTGTTGGCCTGCCAACCACTGGTGGTGTTGCTCCAGCTCCTGCCATCGCAGCTACTGAAG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 TTGTTGGCCTGCCAACCACTGGTGGTGTTGCTCCAGCTCCTGCCATCGCAGCTACTGAAG 1222
Query 1135 CCAAAGCCTAA-CAATGACGAAAAAGGGTTA 1164
||||||||||| ||||||||||||||| |||
Sbjct 1223 CCAAAGCCTAAACAATGACGAAAAAGG-TTA 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5