BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940935
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14550.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1738 0.0
> AT5G14550.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:4691006-4694055
REVERSE LENGTH=1772
Length=1772
Score = 1738 bits (941), Expect = 0.0
Identities = 1097/1169 (94%), Gaps = 24/1169 (2%)
Strand=Plus/Plus
Query 1 ATTTACTGTGTGGATCCAAAATGAAGAAGAAGGTGTCGCAGCAGAAGTTACTGTACAGAT 60
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 304 ATTTTCTGTGTGGATCCAAAATGAAGAAGAAGGTGTCTCAGCAGAAGTTACTGTACAGAT 363
Query 61 GGAAGAGGAAGGTATACGCCACGTTGATGCTCGCTTTCTGCTTGGGGACTTTCG------ 114
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 364 GGAAGAGGAAGGTATACGCCACGTTGATGTTCGCTTTCTGCTTTGGGACTTTCGTATTTA 423
Query 115 T---A-----TTT---ATC----CAAGCTCGTTTCAATGGAATCACTGCGTCTCTCGATT 159
| | ||| ||| ||||||||||||||| ||||| |||||||||||||||
Sbjct 424 TACAAGCTCGTTTCGCATCTATACAAGCTCGTTTCAATCGAATCTCTGCGTCTCTCGATT 483
Query 160 CGCTGAAGAAGCCTCGTCTCGATCAGAAACCACAGATTGCCTTCCTATTCATTGCGCGGA 219
|||| || ||||||||||| ||||||| |||||||||||||||||| |||||||| ||||
Sbjct 484 CGCTTAAAAAGCCTCGTCTAGATCAGAGACCACAGATTGCCTTCCTCTTCATTGCCCGGA 543
Query 220 ATCGACTCCCTCTCGAGCTTGTCTGGGATGCATTCTTTCAGGGTGAGGATGGCAAGTTCT 279
||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 544 ATCGACTCCCTCTCGAGTTTGTCTGGGATGCTTTCTTTAAGGGTGAGGATGGAAAGTTCT 603
Query 280 CAATATATGTTCACTCTAGACCTGGATTCGTTCTCAGCGAGGCTACAACGCGATCCAAGT 339
||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 604 CAATATATGTTCATTCTAGACCTGGATTTGTTCTCAACGAGGCTACAACGCGATCCAAGT 663
Query 340 TCTTCTTGGATCGCCAAGTTAATGACAGTATACAGGTTGATTGGGGTGAATCGACCATGA 399
||| |||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 664 ACTTTTTGGATCGGCAACTTAATGACAGTATACAGGTAGATTGGGGTGAATCAACCATGA 723
Query 400 TTGAAGCAGAACGTGTATTGCTCAGACATGCACTTAGAGATCCATTTAATCACCGCTTTG 459
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 724 TTGAAGCAGAACGTGTATTGCTTAGACATGCACTTAGAGATTCATTTAATCACCGCTTTG 783
Query 460 TTTTTCTTTCTGATAGCTGCATACCTCTGTACAGTTTCAGCTACACGTATAACTACATCA 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TTTTTCTTTCTGATAGCTGCATACCTCTGTACAGTTTCAGCTACACGTATAACTACATCA 843
Query 520 TGTCAGCACCTACTAGTTTCGTTGATAGCTTTGCAGATACAAAAGATAGTCGTTATAATC 579
||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 844 TGTCAACACCAACTAGTTTCGTTGATAGCTTTGCAGATACAAAAGATAGCCGTTATAATC 903
Query 580 CTAGAATGAATCCCATTATTCCTGTTCATAACTGGAGAAAGGGATCACAGTGGGTCGTTC 639
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 904 CTAGAATGAATCCCATTATTCCTGTTCGTAACTGGAGAAAAGGATCACAGTGGGTCGTTC 963
Query 640 TGAATAGAAAACATGCAGAAATTGTGGTGAATGATACCTCCGTCTTTCCTATGTTTCAGC 699
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 964 TGAATAGAAAACACGCAGAAATTGTGGTGAATGATACCTCTGTCTTTCCTATGTTTCAGC 1023
Query 700 AGCATTGCAGGAGAAAATCACTTCCAGAGTTTTGGCGAGATCGTCCTGTACCATCTGAAG 759
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1024 AGCATTGCAGGAGAAAATCACTTCCAGAGTTTTGGCGAGATCGTCCTGTACCAGCTGAAG 1083
Query 760 GTTGGAAGGAACACAACTGTATACCTGATGAGCACTACGTTCAGACATTGCTATCTCAAA 819
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1084 GTTGGAAGGAACACAACTGTATACCTGATGAGCACTATGTTCAGACATTGCTATCTCAAA 1143
Query 820 AGGGTGTGGATAGCGAACTCACACGACGATCACTGACACACTCAGCTTGGGACCTTTCTT 879
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1144 AGGGTGTAGATAGCGAACTCACACGAAGATCACTGACACACTCAGCTTGGGACCTTTCAT 1203
Query 880 CCTCTAAAAGTAATGAACGTCGTGGATGGCATCCTATGACTTACAAGTTTTCTGATGCTA 939
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 CCTCGAAAAGTAATGAACGTCGTGGATGGCATCCTATGACTTACAAGTTTTCTGATGCTA 1263
Query 940 CTCCTGATCTTATACAGTCCATTAAGGGAATCGACAATATCAACTACGAGACTGAATACC 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 CTCCTGATCTTATACAGTCCATTAAGGGAATCGACAATATCAACTACGAGACTGAATACC 1323
Query 1000 GGCGAGAATGGTGTAGCCA-TAAAGGGAAACCGTCGCCGTGCTTTCTCTTCGCCAGGAAG 1058
||||||||||||||||| | |||||||||||| || |||||||| |||||||||||||||
Sbjct 1324 GGCGAGAATGGTGTAGC-AGTAAAGGGAAACCATCACCGTGCTTCCTCTTCGCCAGGAAG 1382
Query 1059 TTCACTCGTCCCGCGGCTCTCCGCCTCCTCCGTGAATCTATCTTGTTAGAGGACAAAGAG 1118
|||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct 1383 TTCACTCGTCCCGCCGCTCTCCGCCTACTCCGTGAAACTATCTTGTTAGAGGGCAAAGAG 1442
Query 1119 CAAGACAATTAAGTAGATCCTTCACCATT 1147
|| |||||| |||||||||||||||||||
Sbjct 1443 CATGACAAT-AAGTAGATCCTTCACCATT 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56425412580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5