BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941035
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15500.2 | Symbols: | Ankyrin repeat family protein | chr5:... 1628 0.0
> AT5G15500.2 | Symbols: | Ankyrin repeat family protein | chr5:5031676-5033465
REVERSE LENGTH=1511
Length=1511
Score = 1628 bits (881), Expect = 0.0
Identities = 1022/1089 (94%), Gaps = 13/1089 (1%)
Strand=Plus/Plus
Query 18 GGTATGACACCATTGCTAGTTGCAGTAAGCAAAAAGAAGATTGATCTGATATCAGAATTC 77
|||||||| |||||||||||||| ||||| | |||||||||||||||||| |||||||||
Sbjct 338 GGTATGACGCCATTGCTAGTTGCGGTAAGTAGAAAGAAGATTGATCTGATGTCAGAATTC 397
Query 78 TTCTTGGTTTGCCCCGAAAGCATTGTGGACGCAAACGTGAACGGAGAAAACGCTCTTCAC 137
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 398 TTCTTGGGTTGTCCCGAAAGCATTGTGGACGCAAATGTGAACGGAGAAAACGCTCTTCAC 457
Query 138 ATCGCCTTGAGTAACTACGACCAAAGAGAAGGATTAAGCGTTATTAAAGTTCTCATGGGA 197
|||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 458 ATCGCCGTGAATAACTACGACCAAAGAGAAGGATTAAGCGTTCTTAAAGTTCTCATGGGA 517
Query 198 TGGATCCTAAGATTGTGTCAAAAAGATGCAGAGTGGATCGAGACAAGAGTGATAAACCGA 257
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 518 TGGATCTTAAGATTGTGTCAAAAAGATGCAGAGTGGATCGAGACAAGAGTCATAAACCGA 577
Query 258 AGAGACAAAGACGGTAGCACACCTTTACATCTCGCGGCGTACGAGAACAATCTTCAAGCT 317
|||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 578 AGAGACAAAGACGGTAACACGCCTTTACATCTCGCGGCGTACGAGATCAATCGTCAAGCT 637
Query 318 ATGAAATTGATGTTAGAGAGTTCAAAGATTAACGTCAACATCGAGAACAAGACCGGTTTA 377
||||||||| |||||||||| || ||||||||||||||||| |||||||||| |||||||
Sbjct 638 ATGAAATTGTTGTTAGAGAGCTCCAAGATTAACGTCAACATTGAGAACAAGAACGGTTTA 697
Query 378 ACCGT-TCTCGACATTGCTGCATTACACAATAACAGAGAGACAGAGAGAATGGTTAAGAG 436
||||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 698 ACCGTGT-TCGACATTGCTGTGTTACACAATAACAGAGAGATAGAGAGAATGGTTAAGAG 756
Query 437 ACATGGTGGAGAACGTTCGGTTTCTCTGGTTAAGATTAAGACAACATCGGATCTACTCGC 496
|||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 757 ACATGGTGGAAAACGTTCGGTTTCTCTTGTCAAGATTAAGACAACATCGGATATACTCGC 816
Query 497 GTCGCAGCTTTCTTGGAGAGAATCGAGACGGACAAAGAAGATTCGGTTTTATTCTTGGAT 556
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 817 GTCGCAGCTTTCTTGGAGAGAATCGAGACGGACGAAGAAGATTCGGTTTTATTCTTGGAT 876
Query 557 CTCTGAAGAGAGAAGAAACGCTCTTTTAGTGGTCGCAGCTCTCATAGTCACAGCTACTTA 616
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 877 CTCTGAAGAGAGAAGAAACGCTCTTTTAGTGGTCGCAACTCTCATCGTCACAGCTACATA 936
Query 617 TCAGACCGTTCTCCAGCCTCCCGGGGGCGTATCTGATGG-GAGCGGTCAAAACGGTGGAA 675
|||||| |||||||| |||||||| ||||| |||||||| | | |||||||| | |
Sbjct 937 TCAGACGGTTCTCCAACCTCCCGGAGGCGTGTCTGATGGCG-GTGGTCAAAA-----G-A 989
Query 676 CTGGAACAAGCGGTCCGAAAGCGGGTTCAGTGGTTATGGACGAGGTCTACTTTATCTGGT 735
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GTGGAACAAGCGGTCCGAAAGCGGGTTCAGTGGTTATGGACGAGGTCTACTTTATCTGGT 1049
Query 736 TATGGTTATGGAACAGTGCGGGTTTCTACTTTGCCATTGAGATGATGATACGTTTGTTGA 795
||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||
Sbjct 1050 TATGGTTGTGGAACAGTGCGGGGTTCTGCTTTGCGATTGAGATGATGATACGTTTGTTGA 1109
Query 796 GTTTAGGACAAGAGAGTATGTTCTGGTATTATCCTCTGTTCGTTCCTCTGCTCTTGGCTT 855
|||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||
Sbjct 1110 GTTTAGGACAAGAGAGTATGTTTTGGTATTACCCTCTGTTCGTTCCTATGGTCTTGGCTT 1169
Query 856 ACTATGTTGCAGGGGATGTGATCAAGCCGAACGCAAGAGCGTACACGATCGCAGGTGTGG 915
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 ACTCTGTTGCAGGGGATGTGATCAAGCCGAACGCAAGAGCGTACACGATCGCAGGTGTGG 1229
Query 916 GTGCGATCGTGGTTCTTATAATTTGGGGATTGGTAGTTCGCTTTTGGGAATGGGTGCAGT 975
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1230 GTGCGATCGTGGTTCTTATAATTTGGGGATTGGTAGTTTGGTTTTGGGAATGGGTGCAGT 1289
Query 976 CTAAGAGAACCAAG-ATGCGTGGACCCAAGAGTGGATTGGTTTGGGAAGGTTTCACTACG 1034
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 CTAAGAGAACCAAGCAA-CGTGGACCCAAGAGTGGATTGGTTTGGGAAGGTTTCACTACG 1348
Query 1035 TTGGATCAAGCTAGAGGTTTTGCGCCTAATCGGTATGGGATTAGGTAATTTTA-TTTCCT 1093
|||||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1349 TTGGATCAAGCTAGAGGTGTTGCGCCTAATCGGTATGTGATTAGGTAATCTTAATTTCCT 1408
Query 1094 CTTGTTATT 1102
|||||||||
Sbjct 1409 CTTGTTATT 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54015786420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5