BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941053
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15640.1 | Symbols: | Mitochondrial substrate carrier famil... 1724 0.0
> AT5G15640.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:5087371-5090040 FORWARD LENGTH=1554
Length=1554
Score = 1724 bits (933), Expect = 0.0
Identities = 985/1011 (97%), Gaps = 0/1011 (0%)
Strand=Plus/Plus
Query 2 CAGCATCCGTGAGAGAGTCATGAACACGCCACCGACTTCTCGTGTCGCATCTTTTGGTCA 61
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 201 CAGCTTCCGTGAGAGAGTCATGGACACGCCACCGACTTCTCGTATCGCATCTTTTGGTCA 260
Query 62 GACGGAGATTAACTGGGACAAACTTGACAAAAGGAGGTTTTACGTTGTTGGAGCTGGCCT 121
||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct 261 GACGGAGATTAACTGGGACAAACTTGACAAAAGGAGGTTCTACATTAATGGAGCTGGCCT 320
Query 122 CTTCACTGGTGTTACAGTAGCTCTGTATCCTGTATCCGTTGTGAAAACAAGGCTTCAAGT 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CTTCACTGGTGTTACAGTAGCTCTGTATCCTGTATCCGTTGTGAAAACAAGGCTTCAAGT 380
Query 182 TGCTTCTAAAGAGATTGCTGAGAGAAGTGCCTTTTCTGTAGTTAAAGGAATCTTAAAGAA 241
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 381 TGCTTCTAAAGAGATTGCTGAGAGAAGTGCCTTTTCTGTAGTTAAAGGAATTTTAAAGAA 440
Query 242 TGATGGTGTTCCTGGTCTGTACCGAGGCTTTGGTACTGTCATTACAGGTGCAGTACCTGC 301
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 441 TGATGGTGTTCCTGGTCTGTACCGAGGTTTTGGTACTGTCATTACAGGTGCTGTACCTGC 500
Query 302 AAGGATTATATTTCTAACTGCTCTTGAGACCACAAAGATTTCTGCTTTTAAGTTGGTTGC 361
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 501 AAGAATCATATTTCTAACTGCTCTTGAGACCACTAAGATTTCTGCTTTTAAGTTGGTTGC 560
Query 362 ACCTTTGGAGCTAAGTGAACCTACACAAGCCGCCATTGCAAATGGAATTGCCGGCATGAC 421
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 561 ACCTTTGGAGTTAAGTGAACCTACACAAGCCGCCATTGCAAATGGAATTGCTGGCATGAC 620
Query 422 AGCATCGCTTTTCTCACAGGCTGTTTTTGTCCCAATTGATGTTGTTAGCCAAAAGTTGAT 481
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 621 AGCATCTCTTTTCTCACAGGCTGTGTTTGTCCCAATTGATGTTGTTAGCCAAAAGTTGAT 680
Query 482 GGTACAAGGATACTCAGGGCATGCTACATATACTGGTGGTATCGATGTCGCCACAAAAAT 541
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 681 GGTACAAGGATACTCAGGTCATGCTACATATACTGGTGGTATCGATGTTGCCACAAAAAT 740
Query 542 CATTAAGTCATATGGCGTAAGGGGCTTATACAGAGGGTTTGGTCTGTCTGTTATGACCTA 601
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 741 CATTAAGTCATATGGTGTAAGGGGATTATACAGAGGGTTTGGTCTGTCTGTTATGACCTA 800
Query 602 TTCTCCTTCAAGTGCTGCTTGGTGGGCTAGCTACGGATCAAGCCAACGTGTTATCTGGAG 661
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 801 TTCTCCTTCAAGTGCCGCTTGGTGGGCTAGCTATGGATCAAGCCAACGTGTTATCTGGAG 860
Query 662 ATTCTTAGGTCATGGTGGTGACTCGGATGCAACTGCTGCTCCTAGTAAGTCAAAAATTGT 721
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 ATTCTTAGGTTATGGTGGTGACTCGGATGCAACTGCTGCTCCTAGTAAGTCAAAAATTGT 920
Query 722 TCTGGTCCAGGCTGCTGGAGGAATTATTGCTGGTGCAACAGCATCCTCAATTACAACACC 781
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TATGGTCCAGGCTGCTGGAGGAATTATTGCTGGTGCAACAGCATCCTCAATTACAACACC 980
Query 782 ATTAGACACAATCAAAACGCGACTGCAGGTCATGGGACATCAAGAAAATAGACCTTCAGC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 ATTAGACACAATCAAAACGCGACTGCAGGTCATGGGACATCAAGAAAATAGACCTTCAGC 1040
Query 842 GAAACAAGTGGTGAAAAAACTGCTAGCAGAAGATGGCTGGAAAGGATTCTATAGGGGTTT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GAAACAAGTGGTGAAAAAACTGCTAGCAGAAGATGGCTGGAAAGGATTCTATAGGGGTTT 1100
Query 902 GGGCCCAAGATTCTTTAGCATGTCGGCTTGGGGAACCTCGATGATATTGACTTACGAATA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GGGCCCAAGATTCTTTAGCATGTCGGCTTGGGGAACCTCGATGATATTGACTTACGAATA 1160
Query 962 CTTAAAGCGTCTGTGTGCAATAGAAGATTAGAAAGCCTCACTACTGTTCGT 1012
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1161 CTTAAAGCGTCTGTGTGCAATAGAAGATTAGAAAGCTTCACTACTGTTCGT 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5