BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941228 Length=1312 Score E Sequences producing significant alignments: (Bits) Value AT5G17230.3 | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659613-5... 1308 0.0 > AT5G17230.3 | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659613-5662865 REVERSE LENGTH=1943 Length=1943 Score = 1308 bits (708), Expect = 0.0 Identities = 767/796 (96%), Gaps = 2/796 (0%) Strand=Plus/Plus Query 519 GTTTGGTGTAGAAGAACTGATGAACTCGTCGATGGGCCTAATGCTTCACATATAACTCCC 578 |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct 944 GTTTGGTGTAGAAGAACTGATGAACTTGTGGATGGGCCAAATGCTTCACATATAACTCCC 1003 Query 579 ATGGCTTTAGATAGATGGGAAGCAAGGTTAGAAGATCTTTTCCGTGGCCGTCCTTTCGAT 638 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1004 ATGGCTTTAGATAGATGGGAAGCAAGGTTAGAAGATCTTTTCCGTGGTCGTCCTTTCGAT 1063 Query 639 ATGCTAGATGCTGCTCTTGCTGATACAGTTGCTAGATACCCGGTCGATATTCAGCCATTT 698 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1064 ATGCTTGATGCTGCTCTCGCTGATACAGTTGCTAGATACCCGGTCGATATTCAGCCATTT 1123 Query 699 CGAGACATGATCGAAGGAATGAGAATGGACTTGAGGAAATCGAGATACCAGAACTTCGAT 758 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1124 CGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGATACCAGAACTTCGAT 1183 Query 759 GATCTATACCTTTACTGCTACTATGTCGCTGGAACCGTCGGATTGATGAGCGTTCCGGTT 818 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1184 GATCTATACCTTTACTGCTACTACGTCGCTGGAACCGTCGGATTGATGAGCGTTCCGGTT 1243 Query 819 ATGGGAATCGATCCTAAGTCGAAAGCAACAACCGAAAGTGTTTACAACGCTGCCTTGGCC 878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1244 ATGGGAATCGATCCTAAGTCGAAAGCAACAACCGAAAGTGTTTACAACGCTGCCTTGGCC 1303 Query 879 CTTGGTATAGCCAATCAGCTTACCAACATACTCAGAGACGTTGGCGAAGATGCGAGAAGA 938 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1304 CTTGGTATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGATGCGAGAAGA 1363 Query 939 GGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAAGCTGGTCTTTCAGATGAAGACATA 998 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1364 GGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGGTCTTTCAGATGAAGACATA 1423 Query 999 TTCGCCGGAAAAGTCACTGATAAATGGAGAAACTTCATGAAAATGCAGCTTAAGCGAGCA 1058 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1424 TTCGCCGGAAAAGTAACTGATAAATGGAGAAACTTCATGAAAATGCAGCTTAAACGAGCA 1483 Query 1059 AGAATGTTCTTCGATGAAGCTGAGAAAGGCGTCACCGAGCTCAGCGCCGCTAGCAGATGG 1118 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1484 AGAATGTTCTTCGACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGG 1543 Query 1119 CCAGTATGGGCATCGTTGCTATTGTACAGGAGAATATTGGACGAGATTGAAGCGAACGAT 1178 || |||||||| || ||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1544 CCTGTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCGAATGAT 1603 Query 1179 TACAACAATTTCACTAAGAGAGCTTATGTGGGGAAAGTCAAGAAAATTGCAGCTTTGCCA 1238 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1604 TACAACAATTTTACTAAGAGAGCTTATGTGGGGAAAGTCAAGAAAATTGCAGCTTTGCCA 1663 Query 1239 TTGGCGTATGCTAAATCAGTGCTAAAGACTTCAAGCTCAAGATTATCAATATGAT--CGA 1296 ||||| |||||||||||||| |||||||||||||| |||||| |||| |||||| ||| Sbjct 1664 TTGGCTTATGCTAAATCAGTACTAAAGACTTCAAGTTCAAGACTATCGATATGAGAGCGA 1723 Query 1297 GAGGAAAGTGGAACAA 1312 |||||||||||||||| Sbjct 1724 GAGGAAAGTGGAACAA 1739 Score = 797 bits (431), Expect = 0.0 Identities = 494/524 (94%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 1 TCTCTCACTCTCTCAAGAACTTGAGTATGTCTTCTTCTGTAGCAGTGTTATGGGTTGCTA 60 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 TCTCTCACGCGCTCAAGAACTTGAGTATGTCTTCTTCTGTAGCAGTGTTATGGGTTGCTA 437 Query 61 CTTCTTCTCTGAATCCTGACCCAATGAACAATTGTGGGTTGGTAAGAGTTCTAGAATCTT 120 |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 438 CTTCTTCTCTAAATCCAGACCCAATGAACAATTGTGGGTTGGTAAGGGTTCTAGAATCTT 497 Query 121 CTAGAATGTTCTCTCCTCT-TCAGAATCAGAGACTAAACAAAGGTAGGTGGAAGCAGACA 179 ||||| ||||||||||| | |||||||||||||||||||||||||| | |||||||| | Sbjct 498 CTAGACTGTTCTCTCCT-TGTCAGAATCAGAGACTAAACAAAGGTAAGAAGAAGCAGATA 556 Query 180 CCAACTTGGAGTTCTTCT---GTAATGAACCCAAGTAGAAGAAGTGGTGTTGTGTCTTCA 236 |||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||| Sbjct 557 CCAACTTGGAGTTCTTCTTTTGTAAGGAACCGAAGTAGAAGAATTGGTGTTGTGTCTTCA 616 Query 237 AGTTTAGTAGCAAGTCCTTCAGGAGAGATAGCCCTCTCATCAGAAGAGAAGGTTTACAAT 296 || ||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||| Sbjct 617 AGCTTAGTAGCAAGTCCTTCTGGAGAGATAGCTCTTTCATCTGAAGAGAAGGTTTACAAT 676 Query 297 GTTGTGCTGAAACAAGCTGCTTTGGTGAACAAACAGCTAAGGTCTTCTTCTTATGATCTT 356 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 677 GTTGTGTTGAAACAAGCTGCTTTGGTGAACAAACAGCTAAGGTCTTCTTCTTATGACCTT 736 Query 357 GATGTGAAGAAACCACAAGATGTTGTTCTTCCAGGGAGTTTGAGTTTGTTGGGTGAAGCT 416 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 737 GATGTGAAGAAACCACAAGATGTTGTTCTTCCTGGGAGTTTGAGTTTGTTGGGTGAAGCT 796 Query 417 TATGATCGATGCGGCGAAGTTTGCGCTGAATATGCTAAAACGTTTTATCTCGGAACTTTG 476 |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 797 TATGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGGAACTTTG 856 Query 477 CTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCTATCTACGT 520 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 857 CTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTACGT 900 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64557900870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5