BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941254 Length=970 Score E Sequences producing significant alignments: (Bits) Value AT5G17460.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1279 0.0 > AT5G17460.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress. | chr5:5757100-5758940 REVERSE LENGTH=1468 Length=1468 Score = 1279 bits (692), Expect = 0.0 Identities = 778/821 (95%), Gaps = 0/821 (0%) Strand=Plus/Plus Query 148 CAACTCGATCATATGCAAGTGGAAGAGGTAAAGACTACAATCTATTTGGTAATGCGAAAC 207 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 261 CAACTCGATTTTATGCAAGTGGAAGAGGAAAAGACTACAATCTATTTGGTAATGTGAAAC 320 Query 208 CAGGTGATGATGACTTTAGAAAAGCCTGGGAGAAAGAAATGGGGGATGATGATACTCTAT 267 ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| Sbjct 321 CAGGTGATGATGACTTTAGAAAAACATGGGAGAAAGAAATGGAGGATGATGATACTCTAT 380 Query 268 GGTCAGGAAGTGAAGACGAAGGCGATGATAATACAAAACAAGAAAGTGGAAGAAACCGCC 327 |||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||| | Sbjct 381 GGTCAGGAAGTGAAGACGAAAGCAATGATAAGACAAAACAAGAAAGCGGAAGAAACCGTC 440 Query 328 TTGAAAAAGAGATTAAGAAAGCTAGACAACAAGCTAAAGTTAGCTCCGATCAAATTGATG 387 ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| Sbjct 441 TTGAAAAAGAGATTAAGAAAGCTAGACAACAAGCTAAGGATAGCACCGATCAAATTGATG 500 Query 388 CTGATGATAGTGATGAATTATACAGTGTTTGGTCAGGAAGTGATGAGGAAAAAACGTTGT 447 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| Sbjct 501 GAGATGATAGTGATGAATTGTACAGCGTTTGGTCAGGAAGTGATGAGGAAAAAACGCTGT 560 Query 448 GGACAGGCGATGAAGGTGATGATGACGACGATATTCCAACAGAGCCACGCCCGAACGAGG 507 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 561 GGACTGGCGATGAAGGTGATGATGACGACGATATTCCAACAGAGCCACGCCCGAACGAGG 620 Query 508 CATCTGATAAATACTTAGATAAGTTGTTTGAGTTTGAGGAGAAGCCAAAGTACAGGACAA 567 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 621 CATCTGATAAATACTTAGATAAGTTGTTTGAGTTTGAGGAGAAACCAAAGTACAGGACAA 680 Query 568 TCTCAGAGTTGTTGAAATCTGAGAATGAACCCGAGGAGCTTTCACCCGGTAAAAAGGCAA 627 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | Sbjct 681 TCTCAGAGTTGTTGAAATCTGAAAATGAACCTGAGGAGCTTTCACCCGGTAAAAAGGCGA 740 Query 628 GGAAGCTTGCTGTTGAGAACGCGCTGAAGAAACTAAACAAAGGGCCGGACGGGCGTTACA 687 ||||||||||||||||||||||| |||||||||| || |||||||| || ||||| |||| Sbjct 741 GGAAGCTTGCTGTTGAGAACGCGTTGAAGAAACTGAATAAAGGGCCTGATGGGCGCTACA 800 Query 688 CAAACGTGTGGGAAGTGATGAGTGATGTCGACATTCTGATTGGAGCGTTTGAAAACATTA 747 |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 801 CAAACGTGTGGGAAGTAATGAGTGATGTTGACATTCTGATTGGAGCATTTGAAAACATTA 860 Query 748 TCTCAGGACCTGAATATGAAGAGCTAAGGAAAGGTGGACCCAAGAGACTTAACATGCAGT 807 |||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 861 TCTCGGGACCTGAGTATGAAGAGCTAAGAAAAGGTGGACCCAAGAGACTGAACATGCAGT 920 Query 808 TCTTCAAGGATATACAAACTCGCATGAGAGATCCAAACTTCAAATTCACACCTGAAATAA 867 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 921 TCTTCAAGGATATACAAACTCGAATGAGAGATCCAAACTTCAAGTTCACACCTGAAATAA 980 Query 868 AGTTGAAGCCAAAGAGTAAACTAGTGCCTAGGAAGAAATGGCAGAAGGCACAGTCCAGAA 927 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 981 AGTTGAAGCCAAAGAGTAAACTAGTGCCTAGGAAGAAATGGCAGAAGGCACAGTCCAGAA 1040 Query 928 TAAGGAAAGCAAAGAAGCGGTAAAAGCTCCATGCTTGTTCA 968 |||||||||| |||||||||||||||||||| ||| ||||| Sbjct 1041 TAAGGAAAGCGAAGAAGCGGTAAAAGCTCCACGCTAGTTCA 1081 Score = 195 bits (105), Expect = 9e-49 Identities = 135/149 (91%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 1 AAGCCGTT-AAAGGGAAAAGGATGTTGGCGCGAAGACTCTACTCTCTGTTCTCAATCATA 59 |||||||| |||| |||||||||||| ||||||||||||| |||||| ||||| ||| || Sbjct 53 AAGCCGTTAAAAGAGAAAAGGATGTTCGCGCGAAGACTCTCCTCTCTATTCTCTATCGTA 112 Query 60 ACCAAAAGATCACAAAGTCGCTTGCTTTCGTGTCCAG-CAACAACTGCTCAAAATTGGGT 118 ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| Sbjct 113 ACCAAAAGATCACAAAGTCGCTTGCTTTCGTGTCC-GACAACTTCTGCTCAAAATTGGGT 171 Query 119 ATTTGCTGGGTTTCGTCAGAATTTACAAG 147 |||||||| ||||||||||| | |||||| Sbjct 172 ATTTGCTGAGTTTCGTCAGACTATACAAG 200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47471268915 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5