BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941373 Length=1703 Score E Sequences producing significant alignments: (Bits) Value AT5G18490.1 | Symbols: | Plant protein of unknown function (DU... 2586 0.0 AT1G04090.1 | Symbols: | Plant protein of unknown function (DU... 84.2 4e-15 > AT5G18490.1 | Symbols: | Plant protein of unknown function (DUF946) | chr5:6134152-6136765 REVERSE LENGTH=1996 Length=1996 Score = 2586 bits (1400), Expect = 0.0 Identities = 1601/1700 (94%), Gaps = 5/1700 (0%) Strand=Plus/Plus Query 7 TCTCGAAATC-AAACGATGTTTTGCGATTGCTTCTACTGGAACAAATCAATCACCGAGTT 65 |||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||| Sbjct 196 TCTCGAAATCAAAACGATGTTTTGCGATTGCTTCTACTGGAATAAAGGTTTCTCCGAGTT 255 Query 66 GGAATCGGAATCGTCCGAGTCAAAGCCCTTCTCGCTTCCGTCTCCTCTTCCTCGATGGCC 125 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 256 GGAATCGGAATCGTCCGAGTCAAAGCCCTTCTCGCTTCCATCTCCTCTTCCTCAATGGCC 315 Query 126 ACAAGGCAGCGGTTTTGCTACTGGAAGGATAAATCTTGGAGAAATCCAAGTGGTGAAAGT 185 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 316 ACAAGGCAGAGGTTTTGCTACTGGAAGGATAAGTCTTGGAGAAATCCAAGTGGTGAAAGT 375 Query 186 CACCGAGTTCGATAGAGTTTGGAAATGTGGCAGGTCGCGTGGTAAATCGAGTTGCGCCTC 245 |||||||||||||||||||||||||||||||| ||||||||||||| || ||||| || Sbjct 376 CACCGAGTTCGATAGAGTTTGGAAATGTGGCACCTCGCGTGGTAAATTAAGATGCGCATC 435 Query 246 TTTTTACAAGCCCGTGGGGATACCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCC 305 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 436 TTTTTACAAACCTGTGGGGATACCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCC 495 Query 306 AAACAATCAGCCATTGAGAGGCTTCGTTCTTGCAGCTCGGGCTAACGAGCCCGGTCATCT 365 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 496 AAACAATCAGCCATTGAGAGGCTTTGTTCTTGCAGCTCGGGCTAACAAGCCCGGTCATCT 555 Query 366 TGCGGATGAGCATCGCCCTCCCTTGAAAAAACCTGTGAATTATTCTTTAGTTTGTAGTTC 425 |||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||| Sbjct 556 AGCGGATGATCATCGCCCTCCTTTGAAAAAGCCTTTGAATTATTCTTTAGTTTGGAGTTC 615 Query 426 AGATTCAGATTGCTACTTCTGGTTACCTAATCCTCCGGTTGGTTATAGAGCCGTGGGAGT 485 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 616 AGATTCAGATTGCTACTTCTGGTTACCTAATCCTCCTGTTGGTTATAGAGCCGTGGGAGT 675 Query 486 TATTGTCACTGATGGATCAGAGGAGCCTGAAGTTGATGAAGTGAGATGTGTAAGAGAGGA 545 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 676 TATTGTCACTGATGGATCAGAGGAGCCTGAAGTTGATGAAGTGAGATGTGTACGAGAGGA 735 Query 546 TCTTACGGAGAGTTGTGAAACCGGTGAGAAGGTTCTTGGCATGGGATCTTTTAATGTCTG 605 |||||| ||||| |||||||||||||||||||||||||| | |||||||||||||| || Sbjct 736 TCTTACAGAGAGCTGTGAAACCGGTGAGAAGGTTCTTGGTGTAGGATCTTTTAATGTTTG 795 Query 606 GAGCACTAAACCATGCGAGACG-GGTATTTGGTCTCGGGGAGTGGAGGTTGGGTCATTCT 664 |||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 796 GAGCACTAAACCTTGCGAGA-GAGGTATTTGGTCTCGTGGAGTGGAGGTTGGGTCATTCG 854 Query 665 TTTGCTCTACTAATGATATGTCTTCTAATTATAAAGCCGCCATGAAGATTGCGTGTTTGA 724 ||||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||| Sbjct 855 TTTGCTCTACTAATGATCTGTCTTCTGATAATAAAGCCGCCATGAACATTGCGTGTTTGA 914 Query 725 AAAATCTCGATCCGAGCCTACATGGCATGCCAAATCCTGACCAGGTCCATGCACTTATTC 784 |||||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||| Sbjct 915 AAAATCTCGACCCGAGCCTACAAGGTATGCCAAATCTTGATCAGGTCCATGCACTTATTC 974 Query 785 AGCATTATGGACCGATAGTCTACTTCCATCCCGAAGAGACTTACATGCCTTCGTCCGTGC 844 | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 975 ACCATTATGGACCGATGGTCTACTTCCATCCCGAAGAGACTTACATGCCTTCGTCTGTGC 1034 Query 845 CATGGTTCTTTAAAAACGGAGCTTTGTTGTACCGGTCTGGGAAATCGCAAGGCGAACCGA 904 ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| Sbjct 1035 CATGGTTCTTTAAAAACGGAGCTTTGTTGCACCGGTTTGGGAAATCTCAAGGCGAACCGA 1094 Query 905 TTAACTATA-CTGGCTCGAACTTGCCTGCGGGTGGAGAAAACGATGGGAGCTTCTGGATT 963 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1095 TTAACT-CAGCTGGCTCGAACTTGCCTGCGGGTGGAGAAAACGATGGGAGCTTCTGGATT 1153 Query 964 GATCTCCCTGAAGATGAAGAAGTTAGAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCA 1023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1154 GATCTCCCTGAAGATGAAGAAGTTAGAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCA 1213 Query 1024 GAGCTTTATGTCCACGTGAAACCAGCACTTGGCGGGATTTTCACAGACATTGTGATGTGG 1083 |||||||| |||||||||||||| || ||||||||||||||||| ||| |||| |||||| Sbjct 1214 GAGCTTTACGTCCACGTGAAACCCGCGCTTGGCGGGATTTTCACGGACGTTGTAATGTGG 1273 Query 1084 ATTTTCTGTCCATTTAATGGCCCAGCCACTCTCAAAATCGGGCTTCTCACCGTACCCATG 1143 || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 1274 ATATTCTGTCCATTTAATGGTCCAGCCACTCTCAAAATCGGGCTTCTCACGGTACCAATG 1333 Query 1144 AACCGCATTGGAGAGCATGTTGGTGATTGGGAACACTTCACATTCAGGATAAGCAATTTC 1203 |||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||| Sbjct 1334 AACCGCCTTGGAGAGCATGTTGGTGATTGGGAACATTTCACATTCCGGATAAGCAACTTC 1393 Query 1204 AACGGCGAGCTTACACAAATGTTCTTCTCACAACATAGCGGTGGAGGATGGGTTGATGTA 1263 |||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1394 AACGGCGATCTTACACAGATGTTCTTCTCACAGCATAGTGGTGGAGGATGGGTTGATGTA 1453 Query 1264 TCGGATCTTGAGTTTGTCAAAGGAAGCAACAAACCGGTTGTGTACTCATCCAAACACGGC 1323 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1454 TCGGATCTTGAGTTTGTCAAAGGAAGCAATAAACCGGTTGTGTACTCATCCAAACACGGT 1513 Query 1324 CACGCGAGTTTCCCACACCCCGGAATGTACCTTCAAGGCCCGTCGAAGCTCGGGATTGGA 1383 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1514 CACGCTAGTTTCCCACACCCGGGAATGTATCTTCAAGGCCCGTCGAAGCTCGGGATTGGA 1573 Query 1384 GTGAGAAACGATGTTGCGAAAAGCAAGTATGCGGTGGATTCTAGTCAAAGATATAGAATC 1443 || ||||||||||||||||||||||||||| |||||||||||||||||| || |||||| Sbjct 1574 GTAAGAAACGATGTTGCGAAAAGCAAGTATATGGTGGATTCTAGTCAAAGGTACAGAATC 1633 Query 1444 GTGGCAGCGGAGTATTTAGGCGAAGGAGCGGTTTCAGAACCGTGCTGGCTGCAGTTCATG 1503 || ||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1634 GTAGCAGCAGAGTATTTAGGCGAAGGAGCGGTTTCAGAACCGTACTGGCTGCAGTTTATG 1693 Query 1504 AGAGAATGGGGACCAACTATAGTGTACGATTCTGCAGCTGAGATCAATAAGATCATTGAT 1563 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 1694 AGAGAATGGGGACCAACTATAGTATATGATTCAGCAGCTGAGATCAATAAGATCATTGAT 1753 Query 1564 CTTCTTCCATTGATTGTGAGGTATTCTTTTGAGAGTCTGTTTCCTATTGAGCTTTACGGC 1623 || |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1754 CTACTTCCACTGATTCTGAGGAATTCTTTTGAGAGTCTGTTTCCTATTGAGCTTTACGGT 1813 Query 1624 GAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATGTGTTGA 1683 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1814 GAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATTTGTTGA 1873 Query 1684 AAACAGAGCTCCTCTGTTTC 1703 |||||||||||||||||||| Sbjct 1874 AAACAGAGCTCCTCTGTTTC 1893 > AT1G04090.1 | Symbols: | Plant protein of unknown function (DUF946) | chr1:1057151-1059419 FORWARD LENGTH=1965 Length=1965 Score = 84.2 bits (45), Expect = 4e-15 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 1620 CGGCGAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATG-T 1678 |||||||||||||||||||||||||||||||||| | |||||| | || ||||||| | | Sbjct 1730 CGGCGAGGAAGGTCCTACAGGACCAAAGGAGAAGAACAATTGGTATGGCGATGAAA-GAT 1788 Query 1679 GTTGAAA 1685 ||||||| Sbjct 1789 GTTGAAA 1795 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84186313965 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5