BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941391 Length=1142 Score E Sequences producing significant alignments: (Bits) Value AT5G18650.1 | Symbols: | CHY-type/CTCHY-type/RING-type Zinc fi... 1875 0.0 > AT5G18650.1 | Symbols: | CHY-type/CTCHY-type/RING-type Zinc finger protein | chr5:6217912-6220702 FORWARD LENGTH=1480 Length=1480 Score = 1875 bits (1015), Expect = 0.0 Identities = 1102/1142 (96%), Gaps = 14/1142 (1%) Strand=Plus/Plus Query 1 GCTTTTCTCCTCCTGTTCTCATGGAAGCTTCACCCAATGATCGACTTCATTTTGGCAAAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 GCTTTTCTCCTCCTGTTCTCATGGAAGCTTCACCCAATGATCGACTTCATTTTGGCAAAA 388 Query 61 TGGGTTTCGGGTGTAAGCATTACAAGAGGAGATGCCAAATCAGAGCTCCATGTTGCAACG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389 TGGGTTTCGGGTGTAAGCATTACAAGAGGAGATGCCAAATCAGAGCTCCATGTTGCAACG 448 Query 121 AAGTCTTCGATTGTCGCCATTGTCACAACGAGAGCACTAGCACATTGCGCAATATCTACG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 449 AAGTCTTCGATTGTCGCCATTGTCACAACGAGAGCACTAGCACATTGCGCAATATCTACG 508 Query 181 ACCGTCACGATCTTGTTCGTCAAGACGTTAAACAAGTGATTTGTTCTGTTTGCGATACAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 509 ACCGTCACGATCTTGTTCGTCAAGACGTTAAACAAGTGATTTGTTCTGTTTGCGATACAG 568 Query 241 AGCAGCCGGTAGCTCAAGTTTGTTCGAATTGTGGTGTCAACATGGGAGAATATTTTTGCA 300 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 569 AGCAGCCGGCAGCTCAAGTTTGTTCGAATTGTGGTGTCAACATGGGAGAATATTTTTGCA 628 Query 301 ACATCTGCAAATTCTATGATGATGATACTGAAAAACAACAGTTCCATTGCGATGAGTGTG 360 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 629 GCATCTGCATATTCTATGATGATGATACTGAAAAACAACAGTTTCATTGCGATGACTGTG 688 Query 361 GAATTTGCAGAGTTGGTGGGCGTGAGAATTTCTTCCATTGCAAGAAGTGTGGATCTTGTT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 GAATTTGCAGAGTTGGTGGGCGTGAGAATTTCTTCCATTGCAAGAAGTGTGGATCTTGTT 748 Query 421 ATGCGGTTGGTCTGCGCAACAACCATCGCTGCGTTGAGAATTCAATGCGTCATCACTGTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 749 ATGCGGTTGGTCTGCGCAACAACCATCGCTGCGTTGAGAATTCAATGCGTCATCACTGTC 808 Query 481 CCATTTGTTACGAGTACCTTTTTGACTCTCTAAAGGACACAAATGTGATGAAATGCGGAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 809 CCATTTGTTACGAGTACCTTTTTGACTCTCTAAAGGACACAAATGTGATGAAATGCGGGC 868 Query 541 ACACAATGCACTTAGAATGCTACAACGAGATGATCAAACGTGACAAGTTTTGTTGTCCGA 600 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 869 ACACAATGCACGTAGAATGCTACAACGAGATGATCAAACGTGACAAGTTTTGTTGTCCAA 928 Query 601 TTTGCTCGAGGTCAGTGATTGATATGTCTAAAACATGGCAGAGACTGGATGAAGAGATCG 660 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 929 TTTGCTCGAGGTCAGTGATTGATATGTCTAAAACATGGCAGAGACTCGATGAAGAGATCG 988 Query 661 AAGCCACTGCTATGCCTTCAGATTACCGCGACAAGAAGGTTTGGATACTATGCAACGATT 720 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 989 AAGCCACTGCTATGCCTTCAGATTACCGTGACAAGAAGGTTTGGATACTTTGCAACGATT 1048 Query 721 GTAACGACACAACAGAAGTGTACTTCCACATAATAGGACAGAAATGTGGACATTGCAGAT 780 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1049 GTAACGACACAACAGAAGTGCACTTCCACATAATCGGACAGAAATGTGGACATTGCAGAT 1108 Query 781 CTTACAACACACGAGCCATCGCGCCTCCTGTTCTTCCTCAATGACAAAACCAAGATCTTC 840 | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1109 CATACAACACACGAGCGATTGCGCCTCCTGTTCTTCCTCAATGACAAAACCAAGATCTTC 1168 Query 841 CCCATGTATTGCCTCCAAAAAGCTAA-CAA-AAGCTTTTTGTTGC-aaaaaaaCTGAGGC 897 || |||||||||||||| ||||| || ||| || ||||||||||| |||||||||||||| Sbjct 1169 CC-ATGTATTGCCTCCAGAAAGC-AAGCAAGAA-CTTTTTGTTGCTAAAAAAACTGAGGC 1225 Query 898 AAAAAGATTGATGATCATAACAAAGaaaaaaaaagaaaaaGATTGATAATCAATTTGATC 957 | | ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 1226 ATA--GATTGATGATCATAACAAAGAAAGAAAAAGAAAAAGATTGATGATCAATTTGATC 1283 Query 958 ATTGGTCACAAAAACAAAACACACATTTGTCTTCTTCATTTGATTTGTTGTTGTTCTTAT 1017 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1284 ATTGGTCACAAAAGCAAAACACACATTTGTCTTCTTCATTTGATTTGTTGTTGTTCTTAT 1343 Query 1018 ACTGTTATATTTTACCATTTGTGTTTGGGTGTTGGCAA-GCGAGGATTATGTATAATATA 1076 ||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1344 ACTGTTACATTTTTCCATTTGTGTTTGGGTGTTGGAAATGCGAGGATTATGTATAATATA 1403 Query 1077 GTCCTCTATATATTCTTGACCCAGGAAAAGTTACCTGGATGATATGTTTTCAGGGATTTT 1136 | ||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 1404 --C-TCTATAT-T-CTTGATCCAGGAAAAGTTACCTGGATAATATGTTTTCAGGGATTTT 1458 Query 1137 TT 1138 || Sbjct 1459 TT 1460 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56023808220 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5