BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941394
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:62259... 2573 0.0
> AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:6225956-6228132
FORWARD LENGTH=1926
Length=1926
Score = 2573 bits (1393), Expect = 0.0
Identities = 1599/1698 (94%), Gaps = 16/1698 (1%)
Strand=Plus/Plus
Query 15 TGTGAAATGGAAGTTTCAGTGATTGGAAATCCTCAAGCGAGGATCTGCAGAGCAGAATTA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TGTGAAATGGAAGTTTCAGTGATTGGAAATCCTCAAGCGAGGATCTGCAGAGCAGAATTA 236
Query 75 GCTTACAGAGAGCTCGGCTTTAGATTTGGCTCCGTTGTAATCTCCGGTGAATCGAGAAAT 134
|||||||||||||| || |||||||||||||| | |||||||||||||||||||||||||
Sbjct 237 GCTTACAGAGAGCTTGGATTTAGATTTGGCTCTGATGTAATCTCCGGTGAATCGAGAAAT 296
Query 135 AGGGTTACTTTCTGCAACCAAAGCTCTAAATGGAAGGAGATCGCGATTCGTTGCTC-TCA 193
||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 297 AGGGTTAGTTTCTGCAACCAAAGCTCTAAATGGAAAGAGATCGCGATACGTTGCTCTTC- 355
Query 194 CAGATCTGTCAAATGTGAAGCCATCGTCCCCGATGACGCTCCTCCGTTTCTCAAATCCGC 253
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 356 GAGATCTGTCAAATGTGAAGCCATCGTCTCCGATGACGCTTCTCCGTTTCTCAAATCCAC 415
Query 254 CCCAAAACCTAAATCGCTCGAGAGTGTGAAATTATTTGTTGGGCTTCCACTGGACACAGT 313
|||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 416 TCCAAAATCTAAATCGCTCGAGAGTGTAAAATTATTTGTTGGGCTTCCGTTAGACACAGT 475
Query 314 TTCAGACTGCAACAACGTGAATCACTTGAAAGCCATCACAGCTGGGCTCAAAGCTTTGAA 373
||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 476 TTCAGACTGCAACAATGTGAATCACTTGAAAGCTATTACAGCTGGGCTTAAAGCTTTGAA 535
Query 374 GCTACTTGGTGTAGAAGGCATTGAGTTACCAAT-TTTCTGGGGAGTTGTTGAGAAGGAAG 432
|||||||||||||||||| ||||||||||| || ||| ||||||||||||||||| ||||
Sbjct 536 GCTACTTGGTGTAGAAGGTATTGAGTTACCTATCTTT-TGGGGAGTTGTTGAGAAAGAAG 594
Query 433 CTGCTGGGAGATATGAATGGTCAGGGTACTTGGCAGTAGCTGAGATTGTTAAGCAAGTGG 492
||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 595 CTGCTGGGAAATATGAATGGTCTGGGTACTTGGCAGTAGCTGAGATTGTTAAGAAAGTGG 654
Query 493 GACTTAAGCTTCATGCTTCACTTTCTTTCCACGGATCGAAACACCCGGAGATAGGTCTTC 552
||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 655 GACTTAAGCTTCATGCTTCACTTTCTTTCCATGGATCGAAACAAACAGAGATAGGTCTTC 714
Query 553 CTGACTGGGTGGCAAAGATTGGTGATGCTGAACCTGGGATATATTTTACAGACAGATATG 612
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 715 CTGATTGGGTGGCAAAGATTGGTGATGCTGAACCAGGGATCTATTTTACAGATAGATATG 774
Query 613 GGCAACAGTACAAAGATTGTTTGACGTTTGCAGTTGATGATGTTCCTGTTCTTGGTGGGA 672
| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||
Sbjct 775 GACAACAGTACAAAGATTGTTTGTCGTTTGCTGTTGATGATGTTCCTGTTCTTGATGGGA 834
Query 673 AGACTCCTATGGAGGTTTACAGAGGTTTCTGTGATAGCTTCAAGTCTGCTTTTTCAGATT 732
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 835 AGACTCCTATGGAGGTTTACAGAGGTTTCTGTGAGAGCTTCAAGTCTGCTTTCGCAGATT 894
Query 733 ACATGGGCAACACAATCACGGGAATCACATTAGGTTTGGGACCAGACGGTGAGCT-AAGA 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 895 ACATGGGCAACACAATCACGGGAATCACATTAGGTTTGGGACCAGACGGTGAGCTGAA-A 953
Query 792 TATCCTTCTCATCAACACGATGTCAAGCGCTCTGGCGCGGGAGAATTCCAGTGTTACGAC 851
||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 954 TATCCTTCTCATCAACATAATGCCAAGCTCTCTGGCGCGGGAGAGTTCCAGTGTTACGAC 1013
Query 852 AAACACATGCTTTCCGCTCTCAAAGCCTACGCTGAATCAACTGGAAACCCTCTTTGGGGT 911
|||||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 1014 AAACACATGCTTTCTGCTCTTAAAGGCTACGCTGAATCCACTGGAAACCCTCTTTGGGGT 1073
Query 912 CTCCGTGGTCCACACGATGCTCCTGCTTATGATCAACAGCCTAATTCCTCTTCATTCTTC 971
||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1074 CTCGGTGGTCCTCACGATGCTCCTGCTTACGATCAACAGCCTAATTCCTCTTCATTCTTC 1133
Query 972 TTAGACGGCGGGTCCTGGGAATCTCAGTACGGAGATTTCTTCTTGTCTTGGTATTCGTCT 1031
| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1134 TCAGACGGCGGGTCATGGGAATCTCAGTACGGCGATTTCTTCTTGTCTTGGTATTCGTCT 1193
Query 1032 CTTCTCTCCTCCCACGCAGACCGAGTTCTCTCAGTTGCTTCATCTGCATTTAGCGGGATT 1091
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1194 CTTCTCACCTCCCACGCAGACCGAGTCCTCTCCGTTGCTTCATCTGCATTTAGCGGGATT 1253
Query 1092 GGAGTGCCTCTATGTGGGAAGCTACCTCTCTTACACCAATGGCACAAGCTAAGATCTCAG 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GGAGTGCCTCTATGTGGGAAGCTACCTCTCTTACACCAATGGCACAAGCTAAGATCTCAT 1313
Query 1152 CCTTCTGAGTTAACAGCTGGATTCTACAGCTCTAATGGTCAGGACAGGTACGAGGCTATC 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CCTTCTGAGTTAACAGCTGGATTCTACAGCTCTAATGGTCAGGACAGGTACGAGGCTATC 1373
Query 1212 GCAGAGATCTTTGCAAAGAACTCATGTAGAATGATAATACCGGGAATGGATCTATCCGAC 1271
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1374 GCAGAGATCTTTGCAAAGAACTCTTGTAGAATGATAATACCAGGAATGGACCTATCCGAC 1433
Query 1272 GAGCATCAGTCACCTGAATCTCTCTCGAGCCCCGAGTCATTACTTACCCACATCAAAACA 1331
||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1434 GAGCACCAATCACCTGAATCTCTCTCGAGCCCCGAGTCATTACTTGGCCACATCAAAACT 1493
Query 1332 TCCTGCAAGAAACAAGGAGTCGTTGTTTCAGGGCAAAACTCGTCCACCCCGGTGCCTGGT 1391
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1494 TCCTGCAAGAAACAAGGAGTCGTTGTCTCAGGGCAAAACTCATCCACCCCGGTTCCTGGT 1553
Query 1392 GGGTTTGAGAGGATTGTTGAGAATCTGAAGGATGGGAATGTAGGAATTGATCTGTTCACT 1451
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1554 GGGTTTGAGAGGATCGTTGAGAATCTGAAGGATGAGAATGTAGGAATTGATCTGTTCACT 1613
Query 1452 TACCAGAGAATGGGAGCACTCTTCTTCTCTCCAGAGCATTTCCATGCATTCACAGTCTTT 1511
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1614 TACCAGAGAATGGGAGCACTTTTCTTCTCTCCAGAGCATTTCCATGCTTTCACAGTCTTT 1673
Query 1512 GTCCGGAACCTGAGCCAATTCGAGTTGTCCTCAGACGATAAAGCAGCAGA---TG---TT 1565
||||||||||||||||||||||||||||||||||||||| |||| |||| || ||
Sbjct 1674 GTCCGGAACCTGAGCCAATTCGAGTTGTCCTCAGACGATCAAGCCTCAGAGGCTGAGGTT 1733
Query 1566 GAAGACGAGACAG-TGAGCATAGGTTCAGGCACTGGTGCACCTAGTTTGCAAACCGCTTA 1624
|| | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 GAGGCCGAGACAGCT-AGCATAGGTTCAGGCACTGGTGCACCTAGTTTGCAAACCGCTTA 1792
Query 1625 ATGAAATGCAAAATCATA-TTTTT-ATGTAAATACGAAAAGTCTCCTGTTGTTTTAGCAT 1682
|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1793 ATGAAATGCAAAATCATAATTTTTTATGTAAATAAGAAAAGTCTCCTGTTGTTTTAGCAT 1852
Query 1683 TTATATAGATTGTCATAT 1700
||||||||| ||||||||
Sbjct 1853 TTATATAGAATGTCATAT 1870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84035712330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5