BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941494
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19460.1 | Symbols: atnudt20, NUDT20 | nudix hydrolase homol... 1548 0.0
AT5G19470.1 | Symbols: atnudt24, NUDT24 | nudix hydrolase homol... 1086 0.0
> AT5G19460.1 | Symbols: atnudt20, NUDT20 | nudix hydrolase homolog
20 | chr5:6562971-6565632 FORWARD LENGTH=1628
Length=1628
Score = 1548 bits (838), Expect = 0.0
Identities = 996/1070 (93%), Gaps = 20/1070 (2%)
Strand=Plus/Plus
Query 91 ACGGTGGCGTTCGAGTTCTATGTCTCC-TCCTCCGCTGCGT-ATTTCCCGCGCTTTTTCA 148
|||||||||||| ||||||||||| || | ||||||||||| | |||||||||||| |||
Sbjct 231 ACGGTGGCGTTCCAGTTCTATGTC-CCTTTCTCCGCTGCGTCA-TTCCCGCGCTTTATCA 288
Query 149 GCTGCAACCACTGTTCCGATAAGCTCCTCCTTCACTTGGGACGACGTAATCGAGACCGGT 208
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 289 GCTGCAACAACTGTTCCGATAAGCTCATCCTTCACGTGGGACGACGTAATCGAGACCGGT 348
Query 209 CGGGAGGAGTATACGCCTCACAACTCCTCCCATCTCACCGGATTTCTCGAGAAAGTCGAT 268
| || | || | | | ||||||| ||| |||||||||||||| |||||||| || |
Sbjct 349 C-GG-GCAG---A-G--T-ACAACTCTTCCGATCTCACCGGATTTTTCGAGAAAATCAAC 399
Query 269 CTCTGCAAACGCGGATCCGAAAAGTTAGCTGAGTTCATTCCATTTGTTATAGAGGAACAA 328
| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 400 CGCTGCAATCGCGGATCCGAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAA 459
Query 329 ATCGTTGGTTATATTCATAAAGGATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTT 388
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATCGTTGGTTATATTCATAAAAGATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTT 519
Query 389 ACATTTTCACAAAATGGTTCTTA-CCATGATCGCGTTGATGGCTTTGTAACGCTTAATCT 447
|||||||||||||||||||||| || ||| || |||||||||| |||||||||||||||
Sbjct 520 ACATTTTCACAAAATGGTTCTTGTCC-TGACCGTGTTGATGGCTATGTAACGCTTAATCT 578
Query 448 GATGCTTGAAAAGCCTGAAGATAGAACCAAAGCAGTTGCAGATGTGATCAAAGTCTTGGG 507
||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 579 GATGCTTCAAAAGCCTGAAGATAGAACCAGAGCAGTTGCAGATGTGATCAAAATATTGGG 638
Query 508 TGACAAAGGAATCATTCCACGAATACGTAATGAGCTTTATCCTGTGAAACCATCGTTTAA 567
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 639 TGACAAAGGAATCATTCCAGGAATACGTAATGAGCTGTATCCTGTGAAACCATCGTTTAA 698
Query 568 TGCCCCGGTCATTTTTTCTCTTGAGCGTGCTGCTGCTCCTTATTTCGGAATAAAGGGTTA 627
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 699 TGCCCCGGTCTTTTTTTCTCTAGAGCGTGCTGCTGCTCCTTATTTCGGAATTAAGGGTTA 758
Query 628 CGGAGTTCACATGAATGGGTATGTAGAAAGAGATGGACAGAAATTTCTATGGATAGGTAA 687
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 759 CGGAGTTCACATGAATGGGTATGTAGAAAGAGATGGACAGAAATTACTGTGGATAGGTAA 818
Query 688 GAGAAGTCTCTCAAAATCCACTTATCCAGGAATGCTTGATCATCTGGTTGCTGGAGGATT 747
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 819 GAGAAGTCTCTCAAAATCCACGTATCCAGGAATGCTTGATCATCTGGTTGCTGGAGGATT 878
Query 748 GCCTCACGGGATTAGCTGCGGTGAGAA-TCTTGTAAAGGAATGCGAAGAGGAAGCTGGGA 806
||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||||||||||
Sbjct 879 GCCTCACGGGATTAGCTGCGGTG-GAAATCTAGTAAAGGAATGTGAAGAGGAAGCTGGGA 937
Query 807 TTTCCAAAGCCATTGCTGATAGGGCAATAGCTGTTGGTGCTGTTTCATACATGGATATCG 866
|||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| ||||
Sbjct 938 TTTCCAGAGCCATTGCTGATAGGGCAATAGCGGTTGGTGCTGTCTCATATTTGGACATCG 997
Query 867 ATCAGTACTGTTTCAAACGTGATGTGCTTTTTTGTTATGATTTGGAACTCCCTCAAGATT 926
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 998 ATCAGTACTGTTTCAAACGTGATGTGCTGTTTTGTTATGATTTGGAACTCCCTGAAGATT 1057
Query 927 TTGTTCCCAAAAATCAAGATGGAGAAGTAGAGAGCTTCAAGTTGATTCCAGTAGCCCAAG 986
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1058 TTGTTCCCAAAAATCAAGATGGAGAAGTTGAGAGCTTCAAGTTGATTCCAGTAGCCCAAG 1117
Query 987 TTGCTAATGTGATTCGGAAGAAGACTAGTTTTTTCAAGGCGAACTGTTCCCTTGTCATTA 1046
|||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1118 TTGCTAGTGTGATT---AAGAAAACTAGTTTCTTCAAGGCGAACTGTTCCCTTGTCATTA 1174
Query 1047 TTGACTTCTTGTTTCGGCACGGGTTCATCAGACCAGAATCATCGGGTTACTTGCATCTAT 1106
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1175 TTGACTTCTTGTTTCGGCACGGGTTTATCAGACCAGAATCATCGGGTTACTTGGATCTAT 1234
Query 1107 ACGGACGCCTGAGGAATAAAGATTGCTCATAAGGATGCTACTATCTGATG 1156
|| |||||||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 1235 ACCAACGCCTGAGGAATAGAGATTGCTCATAGGGATGTTACTATCTGATG 1284
> AT5G19470.1 | Symbols: atnudt24, NUDT24 | nudix hydrolase homolog
24 | chr5:6566357-6568805 FORWARD LENGTH=1271
Length=1271
Score = 1086 bits (588), Expect = 0.0
Identities = 965/1138 (85%), Gaps = 61/1138 (5%)
Strand=Plus/Plus
Query 38 TTTTGTTCAC-TGGTTCCAACTGTCACCTCCTTATTCTCGTCCCACGCGC-T-T------ 88
||||| |||| | | ||| ||| ||||||||||||||| |||||||||| | |
Sbjct 13 TTTTGCTCACTTTG-TCCCACTCCCACCTCCTTATTCTCTTCCCACGCGCTTATACCCAC 71
Query 89 GC-ACGGTGGCGTTCGAGTTCTATG-TC----TCCTCCTCCGCTGCGTATTTCCCGCGCT 142
| || ||||||||||||||| | | || | |||||||||| | ||||||||||| |
Sbjct 72 TCTACAGTGGCGTTCGAGTTCGA-GTTCGAGGT-CTCCTCCGCTACATATTTCCCGCG-T 128
Query 143 TTT-TCAGCTGCAACCACTGTTCCGATAAGCTCC-TCCTTCACTTGGGACGACGTAATCG 200
||| |||| || || |||||||| ||||| || || ||||| ||| |||| || | |
Sbjct 129 TTTATCAGTTG-AA--ACTGTTCCTTTAAGC-CCATCATTCACCTGGAACGATGTTTTTG 184
Query 201 AGACCGGTCGGGAGGAGTATAC--GCCTCACAACTCCTCCCATCTCACCGGATTTCTCGA 258
||| | ||| || || |||| |||||| ||||||||| |||||||||||||||||||
Sbjct 185 AGAACAGTC--GAAAAGAATACGTGCCTCAGAACTCCTCCGATCTCACCGGATTTCTCGA 242
Query 259 GAAAGTCGATCTCTGCAAACGCGGATCCGAAAAGTTAGCTGAGTTCATTCCATTTGTTAT 318
||||||||| | ||| || || |||| || ||||||| |||||||||||||||||||||
Sbjct 243 GAAAGTCGACCGCTGTAATCGTGGATTAGAGAAGTTAGGTGAGTTCATTCCATTTGTTAT 302
Query 319 AGAGGAACAAATCGTTGGTTATATTCATAAAGGATTTACGGAGTACTTGAGGGAGTTTCA 378
||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||| |
Sbjct 303 AGAGGAACAAATCGTTGGTTATATTCACAAGGGATTTACAAAGTACTTGAGGGACTTTAA 362
Query 379 TGATATCTTTACATTTTCACAAAATGGTTCTTACCATGATCGCGTTGATGGCTTTGTAAC 438
||||||||||||||||| | | | | || || | | |||| ||||||
Sbjct 363 TGATATCTTTACATTTT--C---A-----C--A--AT-AT---G--G-TGGCCATGTAAC 401
Query 439 GCTTAATC-TGATGCTTGAAAAGCCTGAAGATAGAACCAAAGCAGTTGCAGATGTGATCA 497
|||||| | |||||||||| ||||||||||| ||||||| |||||||||| |||||||||
Sbjct 402 GCTTAA-CATGATGCTTGACAAGCCTGAAGAAAGAACCAGAGCAGTTGCACATGTGATCA 460
Query 498 AAGTCTTGGGTGACAAAGGAATCATTCCACGAATACGTAATGAGCTTTATCCTGTGAAAC 557
|| | |||||| ||||||||||||| || | ||||| |||||||| ||||||||||| |
Sbjct 461 AAATATTGGGTAACAAAGGAATCATCCCTGGGATACGAAATGAGCTATATCCTGTGAAGC 520
Query 558 CATCGTTTAATGCCCCGGTCATTTTTTCTCTTGAGCGTGCTGCTGCTCCTTATTTCGGAA 617
||||||||||||| || | | |||||||| | ||||||||||||||||||||||| |||
Sbjct 521 CATCGTTTAATGCTCCTGCCTTTTTTTCTATAGAGCGTGCTGCTGCTCCTTATTTTGGAT 580
Query 618 TAAAGGGTTACGGAGTTCACATGAATGGGTATGTAGAAAGAGATGGACAGAAATTTCTAT 677
| |||||||||| | |||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 581 TGAAGGGTTACGCAATTCATGTGAATGGGTATGTAGAAAGAGATGGACAAAAATTTCTAT 640
Query 678 GGATAGGTAAGAGAAGTCTCTCAAAATCCACTTATCCAGGAATGCTTGATCATCTGGTTG 737
|||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 641 GGATAGGTAAAAGAAGTCTAGCAAAATCCACTTATCCAGGAAAACTTGATCATCTGGTTG 700
Query 738 CTGGAGGATTGCCTCACGGGATTAGC-TGCGGTGAGAATCTTGTAAAGGAATGCGAAGAG 796
|||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||
Sbjct 701 CTGGAGGATTGCCTCACGGGATTAGCGTTTG-TGAGAATCTAGTAAAGGAATGCGAAGAG 759
Query 797 GAAGCTGGGATTTCCAAAGCCATTG-CTGATAGGGCAATAGCTGTTGGTGCTGTTTCATA 855
||||||||||||||||||| | ||| |||||||||| || || || |||| |||||| ||
Sbjct 760 GAAGCTGGGATTTCCAAAGTC-TTGGCTGATAGGGCGATTGCGGTCGGTGTTGTTTCCTA 818
Query 856 CATGGATATCGATCAGTACTGTTTCAAACGTGATGTGCTTTTTTGTTATGATTTGGAACT 915
|||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 819 CATGGATATCGATCGGTACTGTTTCACACGTGATGTGCTGTTTTGTTATGATTTGGAACT 878
Query 916 CCCTCAAGATTTTGTTCCCAAAAATCAAGATGGAGAAGTAGAGAGCTTCAAGTTGATTCC 975
|||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||
Sbjct 879 CCCTCAAGATTTTGTTCCCACAAATCAAGATGGAGAAGTTGACAGCTTCAGGTTGATTCC 938
Query 976 AGTAGCCCAAGTTGCTAATGTGATTCGGAAGAAGACTAGTTTTTTCAAGG-CGAACTGTT 1034
||| || ||||||||||||||| ||||||||| |||||||||| |||| | | ||||
Sbjct 939 AGTCGCTCAAGTTGCTAATGTGGTTCGGAAGA---CTAGTTTTTTTAAGGAC-AGTTGTT 994
Query 1035 CCCTTGTCATTATTGACTTCTTGTTTCGGCACGGGTTCATCAGACCAGAATCATCGGGTT 1094
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 995 CCCTGGTCATTATTGACTTCTTGTTTCGGCACGGGTTAATCAGACCAGAGTCACCGGGTT 1054
Query 1095 ACTTGCATCTATACGGACGCCTGAGGAATAAAGATTGCTCATAAGGATGCTACTATCT 1152
||||| |||||||| |||||||||||||| |||||||||||||||| | |||| |||
Sbjct 1055 ACTTGGATCTATACCGACGCCTGAGGAATGGAGATTGCTCATAAGGACGTTACTTTCT 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5