BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941500
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19500.1 | Symbols: | Tryptophan/tyrosine permease | chr5:6... 2401 0.0
> AT5G19500.1 | Symbols: | Tryptophan/tyrosine permease | chr5:6578952-6581945
FORWARD LENGTH=1831
Length=1831
Score = 2401 bits (1300), Expect = 0.0
Identities = 1473/1557 (95%), Gaps = 9/1557 (1%)
Strand=Plus/Plus
Query 5 TCAGACAAACACAGAGATGTCTGTGTCTCTAAGTTACACTTGTCTTCTTCGATTACCCAC 64
||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 52 TCAGACAAACACAGACATGTCTGTGTCTCTAAGCTACACTTGTCTTCTTAGATTACCCAC 111
Query 65 TTTTTCAGTTCCAACGAAACCCA-TAATTCTCAGTGGACCTCTCCCTTTTCATGTACCAA 123
|||||||||||||||||||||| || || ||| |||||||||||||||| || ||||||
Sbjct 112 CTTTTCAGTTCCAACGAAACCCATTAGTT-TCAATGGACCTCTCCCTTTTTATCTACCAA 170
Query 124 GATCTCATATTTCCTCATCTCGTTTTGGTTTCAATTCAAACCCATTCTTAAGAACTCAGA 183
|||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 171 GATCTCATATTTCCTCATCTTGTTTTGGTTTCAAATCAAACCCATTCATAAGAACTCAGA 230
Query 184 CCCCAAGATTCTTCAAGTGTTTGCCTCAGAGAGTGTCTGATGAACGCAGAGAAACACAAG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CCCCAAGATTCTTCAAGTGTTTGCCTCAGAGAGTGTCTGATGAACGCAGAGAAACACAAG 290
Query 244 TAACAAC-G--GAAGAAGAAGATGATGAAGAAGAAAAGGTTGTCGTTTTTGAGAGGCTCT 300
||||||| | ||||||||||| ||||| ||||||||| ||||||| |||||||||||||
Sbjct 291 TAACAACAGAAGAAGAAGAAGAAGATGAGGAAGAAAAGATTGTCGTATTTGAGAGGCTCT 350
Query 301 TCTCTAACCTTAATCAATCAACATTGAAGCGAGAGTCCGGAAGTTTGTCCAGCGCAATTT 360
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 351 TCTCTAACCTGAATCAATCAACATTGAAGCGAGAATCCGGAAGTTTGTCCAGTGCAATTT 410
Query 361 TCTTGGTCGCTGGCACTACCGTAGGTGCAGGGATACTTGCGATTCCAGCTGTGACACAAG 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCTTGGTTGCTGGCACTACCGTAGGTGCAGGGATACTTGCGATTCCAGCTGTGACACAAG 470
Query 421 AATCAGGTTTTCTTGCCTCTGCAGTCGCCTGCATTCTCTGTTGGGCTTTCATGGTTGTGA 480
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 471 AATCAGGTTTTCTAGCCTCTGCAGTCGCCTGCATTCTCTGTTGGGCCTTCATGGTTGTGA 530
Query 481 CAGGTTTGCTGGTTGCTGAAGTAAATGTCAACACCATGAGTGAACTAGGCTCTGGAGGCG 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CAGGTTTGCTGGTTGCAGAAGTAAATGTCAACACCATGAGTGAACTAGGCTCTGGAGGCG 590
Query 541 TATCTCTCGTCTCAATGGCGGAGCGGACTCTTGGGTCTGTTGGAGTTCAAGTTGTTAGTT 600
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 591 TATCTCTTGTCTCAATGGCGAAGCGGACTCTTGGGTCTGTTGGAGTTCAAGTTGTTTCTT 650
Query 601 GGTCTTATCTTCTCATACATTATACCCTTCTCGTGGCCTACATTGCTCGGTCTTCAGGCA 660
|||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct 651 GGTCTTATCTTCTCATACATTACACCCTTCTTGTGGCTTACATTGCTCGGTCATCAGGCA 710
Query 661 TCCTTACAAACTTCCTCGGCATTCCAATATGGGAGAGTGCAACTCTGTTCTCACTAATCT 720
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 711 TCCTTACCAACTTCCTCGGCATTCCGATATGGGAGAGTGCAACTCTATTCTCACTGATCT 770
Query 721 TCGGAGGTCTTTGCTTCTTTGGGAGCCAGCGATTCATCGGTGCAGCCAATGGAGTTCTGG 780
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 771 TCGGAGGCCTTTGCTTCTTTGGAAGCCAGCGATTCATCGGTGCAGCCAATGGAGTTCTGG 830
Query 781 TGTTTGGAGTAATTGCATCGTTTGCAGCACTCGTGGCAGTTGCAAGTGGAGACTTGCACT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 831 TGTTTGGAGTAATTGCATCGTTTGCAGCACTCGTGGCAGTTGCAAGTGGAGACTTACACT 890
Query 841 GGGAAGCTCTTCTCAAGGCTAACTTTGAGGCCGTTCCCATGAGTATACCTATCATTGCCC 900
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 891 GGGAAGCTCTTCTCAAGGCTAACTTTGAGGCCGTTCCCATGAGTGTACCCATCATTGCTC 950
Query 901 TGTCATTTGTTTATCAGAATGTGGTGCCGGTTCTCTGCACAGATCTTGAAGGAGACTTGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TGTCATTTGTTTATCAGAATGTGGTGCCGGTTCTCTGCACAGATCTTGAAGGAGACTTGC 1010
Query 961 CGAAAGTAAGAACCGCGATTGTTCTTGGCACAGCCATACCACTCGGCTTGTTTCTTGTGT 1020
||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1011 CGAGAGTAAGAACCGCCATCGTTCTTGGCACAGCCATACCACTTGGCTTGTTTCTTGTGT 1070
Query 1021 GGAACGGTGTAATTCTTGGGTCGTTTCCAGCAGATACTGGGGTGGCTGCTGAGAAGATGG 1080
|| ||| ||| |||||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 1071 GGGACGCTGTGATTCTTGGATCGTTTCCAGTAGATACTGGGGTGGCTGTTGAGAAGATGG 1130
Query 1081 TCGATCCTCTGCAACAATTGAGATCAAGCAGTGTCACTGTCGGTCCTTTTGTGGAAGCAT 1140
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1131 TCGATCCTCTGCAACAATTGAGATCAAGTAGTGTCACTGTCGGTCCGTTTGTGGAAGCAT 1190
Query 1141 TCTCTCTTTTTGCAATCGCAACATCTTATATAGGGTTTGTCTTAGGCCTCTCTGATTTCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TCTCTCTTTTTGCAATCGCAACATCTTATATAGGGTTTGTCTTAGGCCTCTCTGATTTCT 1250
Query 1201 TCTCTGACTTATTGAAGCTTCCC-AGTGGCCAGAACAAGCCTCTTCTCTACTTGCTTACT 1259
||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1251 TCTCTGACTTATTGAAGCT-CCCGAGTGGCCAGAACAAGCCTCTTCTTTACTTGCTTACT 1309
Query 1260 CTTGTTCCACCGCTTGTCCTGTCCCTACTGGACCCAGAGATTTTCTTCAAAGCCTTAGAT 1319
|| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1310 CTCGTTCCACCGCTTGTTCTGTCCCTACTGGATCCAGAGATTTTCTTCAAGGCCTTAGAT 1369
Query 1320 TTTGCCGGGACATATGGAGTTCTGGTATTGTTCGGAATCCTCCCAGCAGCAATGTCTTGG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TTTGCCGGGACATATGGAGTTCTGGTATTGTTCGGAATCCTCCCAGCAGCAATGTCTTGG 1429
Query 1380 TCAGATAGGTACATAGTCTCATCGCCAACAGTGACAAGATTGCCACAACTTGTTCCAGGA 1439
||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||
Sbjct 1430 TCAGATAGGTACATAGTCTCATCATCAACAGTGACAAGATTACCTCAACTTGTTCCCGGA 1489
Query 1440 GGAAAACTCACCCTTTCTCTTGTCATGGGAGCTTCTGGATACGTGATTCTTTCTGAAGTA 1499
|||||||||||||||||||| || ||||||||| | |||||||| ||| |||||||||||
Sbjct 1490 GGAAAACTCACCCTTTCTCTGGTTATGGGAGCTGCAGGATACGTAATTATTTCTGAAGTA 1549
Query 1500 GTAGAGAATTTTTCAAGGTACCTAAGTAGTT-CTTAACAATAATTCAACGGAATAGT 1555
|||||||||| |||| ||| |||| | ||| ||||||||| || ||||||||||||
Sbjct 1550 ATAGAGAATTTGTCAAAGTATCTAAAT-GTTTCTTAACAATGATGCAACGGAATAGT 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76756633305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5