BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941526 Length=892 Score E Sequences producing significant alignments: (Bits) Value AT5G19750.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1081 0.0 > AT5G19750.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:6677069-6679384 FORWARD LENGTH=1179 Length=1179 Score = 1081 bits (585), Expect = 0.0 Identities = 808/910 (89%), Gaps = 37/910 (4%) Strand=Plus/Plus Query 4 TCAGACCAGACGAAACAACGATGTTTAACCCCATCACTTTAACCCGGAAACCACCACTCC 63 ||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| Sbjct 36 TCAGACCAGACGAAACAACGATGCTTAACTCTATCACTTTAACCCGGAAACCACCACTCC 95 Query 64 CCTTCAATGT-TCTTGCGTTTTCCGGT-A-GA-----AG------GG-C--A-ATGTAT- 104 | ||||| | | ||| |||||| ||| | | | || | | | ||| Sbjct 96 CGTTCAA-CTCTGTTGGGTTTTCAGGTAATCACTCTTCGTCTTTTGGTCGAAGAACTATA 154 Query 105 A---AAGCTAGTTTGAGCAGGGCTCTTTCGTTTGGGTACAAATATGTTGGTTCACTGAAT 161 | ||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 155 ACGGAAGGTAGTTCGAGCAAGGCTCTTTCGTTTGGGTACAAAAATGTTGGTTCACTGAAG 214 Query 162 TTTGGTCGTAGCAATTTGTCC-GGGAGATCCGGAACTGGGTTTGGGCATCTGGGT-CGGG 219 | |||||| ||||| ||| || ||| | || || |||| |||||||||||| || |||| Sbjct 215 TGTGGTCGGAGCAA-TTGGCCGGGGCGTTCTGGGACTGCGTTTGGGCATCT-AGTCCGGG 272 Query 220 TCTCTTCggtctcaggt-ggaagttcaggtggttcaggcgggttaggtggttca---ggt 275 ||||| ||||| ||||| |||| ||||||||| || |||||||||||||||||| ||| Sbjct 273 TCTCTGCGGTCCCAGGTGGGAA-TTCAGGTGGCTCTGGCGGGTTAGGTGGTTCAGGCGGT 331 Query 276 ggtggtggtggttccggcggtggaggtgatggtgaaggtAGCGGCGGAAACGGGAAGAAG 335 |||||||||||||||||| || |||| |||||| || |||| |||||| || |||||| Sbjct 332 GGTGGTGGTGGTTCCGGC---GGCGGTGGTGGTGATGGAAGCGACGGAAAAGGAAAGAAG 388 Query 336 TGGTCA-TTCGTCTCATGGTACTTGGCTCTTCTCTCAGATTCTCCTGTTTTGACTAAAGC 394 |||||| ||| ||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 389 TGGTCACTTC-TCTCATGGTACCAGGCTCTTCTCTCAAACTCTCCTGTTTTGACCAAAGC 447 Query 395 TGTGACCTCAGCACTTTTGACCCTCATTGGAGATGTGATCTGTCAGCTTACAATCAATAA 454 ||||||| |||||||||||| |||| |||||||| |||||||||||||||| ||||| || Sbjct 448 TGTGACCGCAGCACTTTTGAACCTCGTTGGAGATTTGATCTGTCAGCTTACTATCAACAA 507 Query 455 GACCTCATCACTGGACAAGAAGAGGACACTCACGTTTACCTTGTTGGGCTTAGGACTAGT 514 ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 508 GACCTCATCGCTGGACAAGAAGAGGACACTCACCTTTACCTTCTTGGGCTTAGGGCTAGT 567 Query 515 CGGACCAGCATTGCATTTCTGGTATCTGTATTTGAGCAAAGTGGTGACAGCTTCCGGATT 574 ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 568 CGGTCCAACATTGCATTTCTGGTATTTGTATTTGAGCAAAGTGGTGACAGCTTCTGGATT 627 Query 575 ATCAGGCGCAGTTATACGACTTTTACTGGATCAGTTTGTTTTTGCTCCTATTTTTGTTGG 634 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 628 ATCAGGCGCAGTTATACGACTTCTACTGGATCAGTTTGTTTTTGCTCCTATTTTTGTTGG 687 Query 635 AGTTTTCTTATCAGCAGTTGTGACACTTGAAGGAAAACCATCAAATGCCATACCGAAGCT 694 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 688 AGTTTTCTTATCAGCAGTTGTGACACTTGAAGGAAAACCATCAAATGTCATACCGAAGCT 747 Query 695 ACAACAGGAGTGGACTGGTGCAGTGCTAGCAAATTGGCAACTATGGATACCATTTCAGTT 754 |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| Sbjct 748 ACAACAGGAGTGGACTGGTGCAATGATAGCAAATTGGCAGCTATGGATACCATTTCAGTT 807 Query 755 TCTTAACTTCAGATTTGTTCCACAGAACTTCCAGGTACTTGCTTCAAACGTAGTGGCTTT 814 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 808 TCTTAACTTCAGATTTGTTCCACAGAACTACCAGGTACTTGCTTCAAACGTAGTGGCTTT 867 Query 815 GGCTTGGAATGTGATTTTATCATTCAAAGCTCACAAAGAGGTTGTCGCAAAGTAGGCATG 874 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| Sbjct 868 GGCTTGGAATGTGATTTTATCATTCAAAGCTCACAAAGAAGTTGTTGCAAAGTAGACATG 927 Query 875 TTTCTTACCT 884 |||||||||| Sbjct 928 TTTCTTACCT 937 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43553005449 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5