BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941545 Length=763 Score E Sequences producing significant alignments: (Bits) Value AT5G19940.1 | Symbols: | Plastid-lipid associated protein PAP ... 1164 0.0 > AT5G19940.1 | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr5:6739624-6740957 FORWARD LENGTH=1085 Length=1085 Score = 1164 bits (630), Expect = 0.0 Identities = 721/765 (94%), Gaps = 6/765 (1%) Strand=Plus/Plus Query 1 CTT-CTCTCTCTAGAGCAACAATGGCTTCGGCTGCTTCTTCCCTTACAATCGCGTCTTCC 59 ||| ||||||| ||||||||||||||| || |||||||||| |||||||||||||| || Sbjct 49 CTTACTCTCTCCAGAGCAACAATGGCTGCGACTGCTTCTTCTCTTACAATCGCGTCGTCA 108 Query 60 CTCTCCGAACCACGGACTCAGATCCATTCCTCGAAG-CGTTCGAATCTCCCTCTTCAATA 118 |||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| Sbjct 109 TTCTCCGAACCACGGACTCAGATCCATTCCTCG-AGACGTTTGAATCTCCCTCTTCAATA 167 Query 119 TTCAATCCCGTACAAGGCCGTAACACGGAGCAGGACTAGAAGATTAGGACTCGTCGTGAG 178 ||||||||||||||||| || |||||| |||| ||||||||||||||||||||| || Sbjct 168 TTCAATCCCGTACAAGG-TGT--TACGGAGTAGGAGTAGAAGATTAGGACTCGTCGTCAG 224 Query 179 TTCCGTTTCAGCTCCCAACGTTGAGCTCCGTACTGGACCTGATGATCTCATTTCTACCCT 238 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 TTCTGTTTCAGCTCCCAACGTTGAGCTCCGTACTGGACCTGATGATCTCATTTCTACCCT 284 Query 239 CCTCTCTAAGGTTGCAAATAGTGATGGAGGTGTGACGCTAAGCCCTGAGCAGCACAAGGA 298 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 285 CCTCTCTAAGGTTGCGAATAGTGATGGAGGTGTGACGCTAAGCCCTGAGCAGCACAAGGA 344 Query 299 AGTGGCACAAGTGGCTGGAGAGCTTCAAAAGTACTGTGTCAAGGAGCCTGTTAAAAACCC 358 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 345 GGTGGCACAAGTGGCCGGAGAGCTTCAAAAGTACTGTGTCAAGGAGCCTGTCAAAAATCC 404 Query 359 TCTCATTTTCGGAGATTGGGAAGTGGTGTACTGTTCTAGACCGACCTCTCCTGGTGGAGG 418 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 405 TCTCATTTTTGGAGATTGGGAAGTGGTGTACTGTTCTAGACCAACCTCTCCTGGTGGAGG 464 Query 419 CTACAGAAGTGTGATAGGCCGTCTCTTCTTCAAAACGAAAGAGATGGTACAAGCCATCGA 478 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 465 CTACAGAAGCGTGATAGGCCGTCTCTTCTTCAAAACGAAAGAGATGATACAAGCCATCGA 524 Query 479 TGCTCCTGATATCGTTAGGAACAGAGTTTCCATCAATGCTTTTGGTTTTCTTGACGGAGA 538 ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| Sbjct 525 TGCTCCTGATATCGTTAGGAACAAAGTTTCCATTAATGCTTTTGGTTTTCTAGACGGAGA 584 Query 539 TGTCTCCTTGACAGGGAAGTTGAAAGCCTTGGACAGTGAGTGGGTGCAGGTGATATTTGA 598 |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 585 CGTCTCCTTGACAGGGAAGCTGAAAGCGTTGGACAGTGAGTGGGTGCAGGTGATATTTGA 644 Query 599 GCCTCCGGAAATCAAGGTTGGATCTTTGGAATTCAAATACGGGTTTGAAAGCGAAGTGAA 658 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 645 GCCTCCGGAAATCAAGGTTGGATCTTTGGAGTTCAAATACGGGTTCGAAAGCGAAGTGAA 704 Query 659 GCTTCGGATCACATATGTTGATGAGAAACTTAGACTGGGATTAGGCTCTAAAGGATCATT 718 ||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||||| Sbjct 705 GCTTCGGATCACATACGTTGATGAGAAACTTAGGTTGGGATTGGGATCTAAAGGATCATT 764 Query 719 GTTCGTCTTTAGGAGGCGTCAATAATATATATGTTTCTCCCTCGT 763 |||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 765 GTTCGTCTTTAGAAGGCGTCAATAATATATACGTTTCTCCCTCGT 809 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37072800486 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5