BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941577 Length=2280 Score E Sequences producing significant alignments: (Bits) Value AT5G20250.4 | Symbols: DIN10 | Raffinose synthase family protei... 3421 0.0 > AT5G20250.4 | Symbols: DIN10 | Raffinose synthase family protein | chr5:6833659-6836782 FORWARD LENGTH=2753 Length=2753 Score = 3421 bits (1852), Expect = 0.0 Identities = 2156/2301 (94%), Gaps = 27/2301 (1%) Strand=Plus/Plus Query 1 GAGAAAAC---GAAGAAGAAGATATGACGATTAAACCGGCGGTTCGTATTTCCGACGGGA 57 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 334 GAGAAAACGAAGAAGAAGAAGATATGACGATTAAACCGGCGGTTCGTATTTCCGACGGGA 393 Query 58 ATCTAATCATCAAGAACCGGACGATTTTAACCGGTTTACCAGATAATGTCATCACGACGT 117 ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 394 ATCTAATCATCAAAAACCGGACGATTCTAACCGGTGTACCAGATAATGTCATCACGACGT 453 Query 118 CTGCATCGGAGGCTGGACCGGTCGAAGGAGTCTTCGTCGGAGCTGTATTCGACAAGGAAG 177 | |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 454 CAGCATCGGAAGCTGGACCGGTAGAAGGAGTCTTCGTCGGAGCTGTATTTAACAAGGAAG 513 Query 178 AGAGTAAACACGTCGTACCGATCGGTACGCTTCGTAATTCCCGGTTTATGTCTTGTTTTC 237 ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 514 AGAGTAAACACATCGTACCGATCGGTACGCTTCGCAATTCCCGGTTTATGTCTTGTTTCC 573 Query 238 GGTTTAAGCTTTGGTGGATGGCCCAGAGAATGGGCGAGATGGGCCGGGATATTCCATACG 297 |||||||||| ||||||||||||||||||||||| || |||||||| |||||||| |||| Sbjct 574 GGTTTAAGCTCTGGTGGATGGCCCAGAGAATGGGAGAAATGGGCCGAGATATTCCCTACG 633 Query 298 AGACGCAGTTCTTATTGGTCGAGAGCAACGATGGGTCCCACCTTGA-----AC----CT- 347 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 634 AGACGCAGTTCTTATTGGTCGAGAGCAACGATGGGTCCCACCTTGAGTCTGACGGAGCTA 693 Query 348 --GACG--GAG-CTAACCAGAAAGTTTACACCGTCTTCTTGCCGTTAATCGAAGGATCTT 402 | || ||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 694 ACGGCGTCGAGTGTAACCAGAAAGTTTACACCGTTTTCTTGCCGTTAATCGAAGGATCTT 753 Query 403 TCCGTTCGTGTCTCCAAGGAAACGTTAACGATGAGGTTGAGCTCTGTTTGGAGAGTGGTG 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 754 TCCGTTCGTGTCTCCAAGGAAACGTTAACGATGAGGTTGAGCTCTGTTTGGAGAGTGGTG 813 Query 463 ACGTCGACACTAAACGGTCGTCGTTTACTCACTCTCTTTATATTCACGCCGGTACAGATC 522 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 814 ACGTGGACACTAAACGGTCGTCGTTTACTCACTCTCTGTATATTCACGCCGGTACAGATC 873 Query 523 CGTTTCAGACGATAACGGAAGCTATTCGTACCGTTAAGTTGCATCTGAATAGTTTCCGTC 582 |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 874 CGTTTCAGACAATAACGGACGCTATTCGCACCGTTAAGTTGCATCTGAATAGTTTCCGTC 933 Query 583 AGCGTCACGAAAAGAAACTTCCAGGGATCGTTGACTACTTCGGGTGGTGCACTTGGGACG 642 | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 934 AACGTCACGAAAAGAAGCTTCCAGGGATCGTTGACTACTTCGGATGGTGCACTTGGGACG 993 Query 643 CGTTTTATCAAGAAGTGACCCAAGAAGGCGTCGAAGATGGTCTTGAGTCTCTCTCCGCCG 702 ||||||||||||||||||| || ||||||||||||| ||||||| |||||||| |||||| Sbjct 994 CGTTTTATCAAGAAGTGACTCAGGAAGGCGTCGAAGCTGGTCTTAAGTCTCTCGCCGCCG 1053 Query 703 GTGGTACGCCGCCGAAGTTTGTCATTATCGACGACGGTTGGCAATCCGTTGAGAGGGATG 762 |||||||||||||||||||||| || || ||||||||||||||||| |||||||| |||| Sbjct 1054 GTGGTACGCCGCCGAAGTTTGTTATCATAGACGACGGTTGGCAATCAGTTGAGAGAGATG 1113 Query 763 ACACGGTGGAGACCGGAGATGAGAAGAAAGAG-CAGGCGGTTTCTCGATTGACCGGGATT 821 |||||||||| |||||||||||||||||||| || || ||| |||| |||| ||||| Sbjct 1114 CCACGGTGGAGGCCGGAGATGAGAAGAAAGAGTCA-CCGATTTTTCGACTGACGGGGATC 1172 Query 822 AAGGAGAATGAAAAGTTTAAGAAGAAGGATGATCCAAACGTTGGGATTAAGAACATTGTC 881 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1173 AAGGAGAACGAAAAGTTTAAGAAGAAGGATGATCCAAACGTTGGGATTAAGAACATTGTC 1232 Query 882 AAGATTGCCAAGGAGAAACACGGTTTGAAATACGTTTACGTGTGGCACGCGATAACGGGT 941 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1233 AAGATTGCTAAGGAGAAACACGGTTTGAAATATGTTTACGTGTGGCACGCGATAACGGGT 1292 Query 942 TATTGGGGCGGAGTTAGACCCGGGGGAGAATACGGATCTGTGATGAAGTATCCTAATATG 1001 ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| Sbjct 1293 TATTGGGGCGGAGTTAGACCCGGGGAAGAATACGGATCTGTTATGAAATATCCTAATATG 1352 Query 1002 TCAAAGGGTGTGGTGGAGAACGATCCAACGTGGAAGACGGATATAATGGCGCTGCAAGGG 1061 |||||||||||||||||||| ||||| ||||||||||| ||| ||||| ||||||||||| Sbjct 1353 TCAAAGGGTGTGGTGGAGAATGATCCGACGTGGAAGACTGATGTAATGACGCTGCAAGGG 1412 Query 1062 TTGGGTTTGGTTAGTCCCAAGAAAGTGTATAAGTTCTACAATGAGCTTCATAGTTACTTG 1121 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1413 TTGGGTTTGGTTAGCCCCAAGAAAGTGTATAAGTTTTACAATGAGCTTCATAGTTACTTG 1472 Query 1122 GCTGATGCTGGTGTGGACGGTGTGAAAGTGGATGTGCAGTGTATATTGGAGACTTTGGGT 1181 ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1473 GCTGATGCTGGCGTGGACGGTGTGAAAGTGGATGTGCAGTGTGTATTGGAGACTTTGGGT 1532 Query 1182 GGTGGTTTAGGCGGTCGGGTTGAGTTAACTCGTCAGTTTCATCAAGCTCTTGACTCCTCT 1241 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1533 GGTGGTTTAGGCGGTCGGGTTGAGCTGACTCGTCAGTTTCATCAAGCTCTTGACTCCTCT 1592 Query 1242 GTTGCAAAAAACTTCCCTGACAATGGCTGCATTGCTTGTATGAGCCACAATACGGATGCT 1301 ||||| || |||||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct 1593 GTTGCTAAGAACTTCCCGGATAATGGCTGCATTGCTTGTATGAGCCATAATACGGATGCT 1652 Query 1302 CTCTACTGCTCGAAGCAAGCAGCTGTGATTAGAGCATCAGATGATTTCTACCCACGCGAT 1361 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1653 CTTTACTGCTCGAAGCAAGCAGCTGTGATTAGAGCATCAGATGATTTCTATCCACGGGAT 1712 Query 1362 CCGGTGTCTCACACCATCCATATAGCTTCGGTTGCATACAACAGTGTGTTCTTGGGAGAG 1421 ||||||||||| |||||||||||||| || ||||| || ||||||||||||||||||||| Sbjct 1713 CCGGTGTCTCATACCATCCATATAGCCTCCGTTGCTTATAACAGTGTGTTCTTGGGAGAG 1772 Query 1422 TTTATGCAGCCTGACTGGGATATGTTCCATTCCGTGCACCCTGCAGCAGAGTACCATGCC 1481 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1773 TTTATGCAGCCTGACTGGGATATGTTCCATTCCGTGCACCCTGCTGCAGAGTATCATGCC 1832 Query 1482 TCTGCGAGGGCCATCAGTGGTGGGCCTCTCTATGTCAGTGATGCTCCTGGAAAGCACAAC 1541 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1833 TCTGCTAGGGCCATCAGTGGTGGGCCTCTCTATGTCAGTGATTCTCCTGGAAAGCACAAC 1892 Query 1542 TTTGAGCTTCTAAGAAAGCTTGTATTGCCTGATGGATCGATTCTTCGTGCTCGATTGCCT 1601 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1893 TTTGAGCTTCTAAGAAAGCTTGTATTGCCTGATGGATCGATTCTTCGTGCTCGACTCCCT 1952 Query 1602 GGTAGACCGACTCGCGATTGTTTGTTCGCAGATCCTGCCCGTGATGGTGTCAGCTTGCTA 1661 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1953 GGTAGACCAACTCGCGATTGTTTGTTCGCTGATCCTGCCCGTGATGGTGTCAGCTTGCTA 2012 Query 1662 AAGATATGGAACATGAACAAGTACACTGGAGTTCTTGGCGTGTATAACTGCCAAGGAGCA 1721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2013 AAGATATGGAACATGAACAAGTACACTGGAGTTCTTGGCGTGTATAACTGCCAAGGAGCA 2072 Query 1722 GCTTGGAGCAGCACAGAAAGAAAAAACATCTTCCACCAGACAAAAACTGATAGCCTCACT 1781 ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct 2073 GCTTGGAGCAGCACAGAGAGAAAAAACATTTTCCACCAGACTAAAACTGATAGCCTCACT 2132 Query 1782 GGCTCCATTCGTGGTCGTGATGTGCATTTAATATCCAAGGCCTCTACTGATCCA-CGGAC 1840 |||||||||||||||||||||||||||| |||||| ||||||| ||||||||| | || Sbjct 2133 GGCTCCATTCGTGGTCGTGATGTGCATTCAATATCGGAGGCCTCCACTGATCCAACA-AC 2191 Query 1841 CTGGAATGGAGACTGTGCTGTTTACTCCCAGAGCAGAGGCGAACTTATCATTATGCCATA 1900 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2192 CTGGAATGGAGACTGTGCTGTTTACTCCCAGAGCAGAGGCGAACTTATTGTTATGCCATA 2251 Query 1901 CAATGTGTCTCTTCCAATCTCACTCAAAATCTGTGAGCACGAGATCTTCACCGTGAGTCC 1960 |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| || Sbjct 2252 CAATGTGTCTCTTCCAGTCTCACTCAAAATCCGTGAGCACGAGATCTTCACGGTGAGCCC 2311 Query 1961 CATTAAG-CATCTGGCTACTGATGGTATCTCATTTGCTCCGCTCGGTCTTGTAAACATGT 2019 ||||| | ||||| | | ||||||| | || ||||| || | ||||| |||||||||| Sbjct 2312 CATTA-GTCATCTTG-T--TGATGGTGTATCTTTTGCCCCAATTGGTCTAGTAAACATGT 2367 Query 2020 ACAATTCGGGAGGAGCTATCGAAGGACTTAAATATGAAGCCGAGAAGATGAAAGTGGTAA 2079 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2368 ACAATTCGGGAGGAGCTATCGAAGGACTTAGATATGAAGCCGAGAAGATGAAAGTGGTAA 2427 Query 2080 TGGAAGTTAAAGGGTGTGGCAAATTCGGATCTTACTCTTCTGTGAAGCCTAAGAGGTGCG 2139 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2428 TGGAAGTTAAAGGATGTGGCAAATTCGGATCTTACTCTTCTGTGAAGCCTAAGAGATGCG 2487 Query 2140 TCGTTGAGTCACATGAGATTGCATTCGAGTACGATTCCTCCTCTGGATTGGTCACCTTTG 2199 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2488 TTGTTGAGTCAAATGAGATTGCATTCGAGTACGATTCCTCCTCTGGATTGGTCACCTTTG 2547 Query 2200 AGTTGGACAAAATGCCTGTAGAGACCAAAAGATTACATCTGATCGAAGTTGAGCTATGAA 2259 |||| |||||||||||| |||||| |||| |||| ||||||||| |||||||| |||||| Sbjct 2548 AGTTAGACAAAATGCCTATAGAGAACAAACGATTTCATCTGATCCAAGTTGAGTTATGAA 2607 Query 2260 GAGTGATTCATACAATTCATT 2280 ||||||||||||||||||||| Sbjct 2608 GAGTGATTCATACAATTCATT 2628 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 113152028430 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5