BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941582
Length=2404
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20300.1 | Symbols: | Avirulence induced gene (AIG1) family... 3818 0.0
> AT5G20300.1 | Symbols: | Avirulence induced gene (AIG1) family
protein | chr5:6853426-6856902 REVERSE LENGTH=2564
Length=2564
Score = 3818 bits (2067), Expect = 0.0
Identities = 2281/2385 (96%), Gaps = 11/2385 (0%)
Strand=Plus/Plus
Query 20 AATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAATGGCATCATCTAGACC 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAATGGCATCATCTAGACC 123
Query 80 ACTTTTGGGAAGTGACCCTTTTTTCCGTGA--CTC-TCAAGAACAAGATAACCTGTCTCA 136
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 124 ACTTTTGGGAAGTGACCCTTTTTTCCGTGACCCTCATCAAGAACAAGATAACCACTCTCA 183
Query 137 AGTACCTGCTGCACCAGAACCAGTGACAAGT-TTGGAAGCACCATGTTCAACCAGTGGTG 195
|| |||||| |||||| |||||||||| | | | |||| ||||||||||||||||| |||
Sbjct 184 AGCACCTGCCGCACCACAACCAGTGAC-ACTCTCGGAACCACCATGTTCAACCAGTAGTG 242
Query 196 ATGTAGAAATTCAGCCTCCTCTCTCTCAGCAACAAGTTCCACTCGAAAGCTTGTACCAGT 255
|| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 243 ATTTAGAAATTCTGCCTCCTCTCTCTCAGCAACAAGTTCCACTTGAAAGCTTGTACCAGT 302
Query 256 CAAGTATTGATCTTAATGGAATGAAACCTAATCCACTAGCAAAGATTGGTGACCTCCAAG 315
|||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||| ||||
Sbjct 303 CAAGTATTGATCTTAACGGAAAGAAACATAATCCACTAGCAAAGATTGGTGGCCTTCAAG 362
Query 316 TGCAGTTCTTACGCCTTGTTCAAAGGTTTGGGCAGTCACAGAATAATATTCTAGTCTCCA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TGCAGTTCTTACGCCTTGTTCAAAGGTTTGGGCAGTCACAGAATAATATTCTAGTCTCCA 422
Query 376 AGGTTTTATATCGGGTACACCTTGCGATGATGATACGAGCTGAGGAATCAGAACTTAA-A 434
||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 423 AGGTTTTGTATCGGGTACATCTTGCGATGCTGATACGAGCTGAGGAATCAGAACTTAAGA 482
Query 435 ACTGTAAAACTTAGGCAAGATAGGGCCAAAGCTTTAGCAAGGGAGCAAGAATTATCTGGC 494
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 483 A-TGTAAAACTTAGGCAAGATAGGGCCAAAGCTTTAGCAAGGGAGCAAGAATCATCTGGC 541
Query 495 ATACCGGAGCTGGATTTCTCACTTAGAATCCTTATCCTGGGGAAAACAGGTGTTGGCAAG 554
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 542 ATACCGGAGCTTGATTTCTCACTTAGAATCCTTGTCCTGGGGAAAACAGGTGTCGGCAAG 601
Query 555 AGTGCAACCATAAACTCTATTTTTGGTCAGTCCAAAAGTGAAACCGATGCTTTCCGACCG 614
|||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 602 AGTGCAACCATAAACTCTATTTTTGGTCAGCCCAAAAGTGAGACTGATGCTTTCCGACCG 661
Query 615 GCCACAGATCGCATAGAAGAGGTTATGGGAACTGTCAGTGGAGTTAAAGTAACCTTTATT 674
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 662 GGCACAGATCGCATAGAAGAGGTTATGGGAACTGTCAGTGGAGTTAAAGTTACCTTTATT 721
Query 675 GATACCCCTGGTTTTCACCCACTGTCATCTTCTAGCACAAGAAAAAACCGAAAGATTCTC 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GATACCCCTGGTTTTCACCCACTGTCATCTTCTAGCACAAGAAAAAACCGAAAGATTCTC 781
Query 735 CTCTCTATTAAGAGATACGTTAAGAAGCGTCCACCTGATGTAGTTCTTTACTTGGACCGC 794
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 CTATCTATTAAGAGATATGTTAAGAAGCGTCCACCTGATGTAGTTCTTTACTTGGACCGC 841
Query 795 CTTGATATGATCGACATGCGATACAGTGATTTTTCCCTCTTGCAGCTTATAAGTGAAATC 854
|||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 842 CTTGATATGATCGACATGCGATACAGTGATTTCTCCCTCCTGCAGCTTATAACTGAAATC 901
Query 855 TTTGGTGCAGCTATATGGTTAAACACGATTCTTGTAATGACGCATTCCTCAACTACTACA 914
||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 902 TTTGGTGCAGCTATATGGTTAAACACGATACTTGTAATGACGCATTCCGCAGCTACTACA 961
Query 915 GAAGGACGTAATGGACAATCTGTGAACTATGAGTCATATGTGGGCCAGCGCATGGATGTG 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GAAGGACGTAATGGACAATCTGTGAACTATGAGTCATATGTGGGCCAGCGCATGGATGTG 1021
Query 975 GTTCAGCATTATATACATCAGGCTGTGTCTGATACAAAACTAGAAAACCCTGTGCTGTTA 1034
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1022 GTTCAACATTATATACATCAGGCTGTGTCTGATACAAAACTAGAAAACCCTGTTCTGTTA 1081
Query 1035 GTTGAAAATCATCCCAGCTGTAAAAAGAATCTTGCTGGTGAGTATGTTCTTCCAAATGGG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GTTGAAAATCATCCCAGCTGTAAAAAGAATCTTGCTGGTGAGTATGTTCTTCCAAATGGG 1141
Query 1095 TTGGTATGGAAGCCTCAGTTTATGTTTTTGTGCGTTTGTACCAAAGTTCTTGGCGATGTC 1154
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1142 GTGGTATGGAAGCCTCAGTTTATGTTTCTGTGCGTTTGTACCAAAGTTCTTGGCGATGTC 1201
Query 1155 CAGTCTTTACTGAAATTTCGTGACAGCATTGGCCTGGGACAGCCAAGTAGTACCCGAACA 1214
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1202 CAGTCTTTACTGAGATTTCGTGACAGCATTGGCCTGGGTCAGCCAAGTAGTACCCGAACA 1261
Query 1215 GCTTCTCTTCCTCATCTTCTTTCAGTTTTTCTGCGCCGTCGCTTATCAGCTGGTGCAGAT 1274
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1262 GCTTCCCTTCCTCATCTTCTTTCAGTTTTTCTGCGCCGTCGCTTATCATCAGGTGCAGAT 1321
Query 1275 GAAGCAGAGAAAGAGATAGACGAGCTTCTGAATTTGGATTTAGAGGAGGAAGATGAGTAT 1334
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GAAACAGAGAAAGAGATAGATAAGCTTCTGAATTTGGATTTAGAGGAGGAAGATGAGTAT 1381
Query 1335 GACCAGTTGCCTACAATCCGTATCCTTGGGAAATCCCGGTTTGAGAAGCTGTCAAAGTCT 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 GACCAGTTGCCTACAATCCGTATCCTTGGGAAATCCCGGTTTGAGAAGCTGTCAAAGTCT 1441
Query 1395 CAGAAGAAAGAGTATCTCGATGAGCTTGATTACAGGGAAACCCTTTATCTGAAGAAACAA 1454
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 CAGAAGAAGGAGTATCTCGATGAGCTTGATTACAGGGAAACCCTTTATCTGAAGAAACAA 1501
Query 1455 TTGAAGGAAGAATGCCGAAGACGACGGGATGAAAAGCTAATTGAAGAGGAAAATCTCAAT 1514
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1502 TTGAAGGAAGAATGCCGAAGACGACGGGATGAAAAGCTAGTTGAAGAGGAAAATCTCGAG 1561
Query 1515 GACACTGAACAGAGCGAGCAAGCAGCTGTTCCACTGCCTGACATGGCAGGTCCAGACAGT 1574
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 GACACTGAACAGCGTGATCAAGCAGCTGTTCCACTGCCTGACATGGCAGGTCCAGACAGT 1621
Query 1575 TTCGATTCGGATTTTCCGGCTCACAGATATCGATGCGT-TGCGGCAGGTGACCAGTGGCT 1633
|| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1622 TTTGATTCGGATTTTCCGGCTCACAGATATCGATGCGTAT-CGGCAGGTGACCAGTGGCT 1680
Query 1634 CGTGAGACCTGTCTATGATCCACAAGGTTGGGATCGCGATGTGGGATTTGATGGAATAAA 1693
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CGTGAGACCTGTCTATGACCCACAAGGTTGGGATCGCGATGTGGGATTTGATGGAATAAA 1740
Query 1694 TATTGAGACAGCTGCAAAAATAAAAAGGAATCTATTTGCTTCAGCTACAGGACAGGTGAG 1753
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1741 TATTGAGACGGCTGCAAAAATAAATAGGAATCTATTCGCTTCAGCTACAGGACAGGTGAG 1800
Query 1754 CAGAGACAAGCAACGTTTCACTATCCAATCCGAGACTAATGCAGCATATACTAGAAACTT 1813
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1801 CAGAGACAAGCAACGCTTCACTATCCAATCTGAGACTAATGCAGCTTATACTAGAAACTT 1860
Query 1814 TAGAGAACAGACGTTCGCTGTAGCTGTTGACCTTCAATCATCAGGAGAAGATCTGGTGTA 1873
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TAGAGAACAGACATTCTCTGTAGCTGTTGACCTTCAATCATCAGGAGAAGATCTGGTGTA 1920
Query 1874 CTCGTTTCAGGGCGGCACAAAGCTTCAAACATTTAAGCACAACACAACTGATCTTGGAGT 1933
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1921 CTCGTTTCAGGGCGGCACAAAGCTTCAAACATTTAAGCACAACACAACTGATGTTGGAGT 1980
Query 1934 TGGGGTGACATCTTTTGGTGGGAAATACTATGTGGGCGGAAAGCTTGAGGATACCTTATT 1993
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 TGGTTTGACATCTTTTGGTGGGAAATACTATGTGGGCGGAAAGCTTGAGGATACCTTATT 2040
Query 1994 GGTTGGGAAGAGGGTGAAGTTAACTGTGAATGCAGGTCAGATGAGGGGTTCAGGGCAAAC 2053
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2041 GGTTGGGAAGAGGGTGAAGTTAACTGCGAATGCAGGTCAGATGAGGGGTTCAGGGCAAAC 2100
Query 2054 AGCACATGGTGGGAGCTTTGAAGCTTGTATCAGAGGGAGAGATTACCCGGTCAGAAATGA 2113
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 AGCAAACGGCGGGAGCTTTGAAGCTTGTATCAGAGGGAGAGATTACCCGGTCAGAAATGA 2160
Query 2114 GCAAATCAGTTTGACAACGACTGCTCTGTCATTCAACCGAGAGCTGGTCTTGAACTATGG 2173
||||||| ||||||||| ||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct 2161 GCAAATCGGTTTGACAATGACGGCTCTGTCTTTCAAGCGAGAACTGGTCTTGAACTATGG 2220
Query 2174 TTTACAGACTCAGCTTAGACCAGCACGGGGCACGAACATAGACGTCAGCATAAACATGAA 2233
||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2221 TTTACAGACTCAGTTTAGACCAGCCCGGGGCACGAACATAGACGTCAACATAAACATGAA 2280
Query 2234 CAACAGGAAAATGGGGAAGATAAACGTGAAACTCAACAGCGCTGAGCACTGGGAGATCGC 2293
||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||
Sbjct 2281 CAATAGGAAAATGGGGAAGATAAATGTGAAACTTAACAGCTCTGAGCACTGGGAGATTGC 2340
Query 2294 TTTGATATCAGCGTTAACGATGTTCAAGGCTTTAGTACGGCGGAGGAAGAGTGAAATGAC 2353
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 2341 TTTGATATCAGCGTTAACGATGTTCAAGGCTTTAGTACGGCGGAGTAAGACTGAAATGAC 2400
Query 2354 AAAGGAAAATGAAGAAGAAGAG-TTGTGACTTTTCTTCGTTTCCT 2397
||||||||||||||||| || |||||| |||||| ||||||||
Sbjct 2401 TGAGGAAAATGAAGAAGAAAAGATTGTGAATTTTCT-CGTTTCCT 2444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119376896010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5