BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941585 Length=1733 Score E Sequences producing significant alignments: (Bits) Value AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex... 841 0.0 > AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex subunit 8 | chr3:17779653-17782645 REVERSE LENGTH=1967 Length=1967 Score = 841 bits (455), Expect = 0.0 Identities = 508/533 (95%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 855 AGGGAATTTGACCACGTTGAAATCATGGTTAG-AGAACATCTGAGAAACGATCCCTATCG 913 |||||||| ||||| ||||||||||| ||| | ||||| ||||||||||||||| ||||| Sbjct 933 AGGGAATTCGACCAGGTTGAAATCAT-GTTTGAAGAACTTCTGAGAAACGATCCATATCG 991 Query 914 GATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 973 | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 992 GGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1051 Query 974 GAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1033 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1052 GAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1111 Query 1034 CATTGGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAACAGTTATGTACTTCCGGAG 1093 ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 1112 CATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAGTTATGTATTTCCGGAG 1171 Query 1094 AGCTTTAAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTATGGGCCATGAATATGT 1150 |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1172 AGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTATGGGCCATGAATATGT 1231 Query 1151 TGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1210 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1232 TGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1291 Query 1211 TTGTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATGTGAGATGATGGGGATGCCTTT 1270 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1292 TACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1351 Query 1271 CTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAAACGATTCTCGGTTGTG 1330 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1352 CTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAAATGATTCTCGGTTGTG 1411 Query 1331 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1383 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1412 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1464 Score = 318 bits (172), Expect = 1e-85 Identities = 188/196 (96%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1398 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTA 1457 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 1533 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTA 1592 Query 1458 GAGAGAATGGATGCTGAAGGATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTT 1517 |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| Sbjct 1593 GAGAGAATGGATGCTGAAGGATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTT 1652 Query 1518 GCCACACATTTTAAAACTCACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTT 1577 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1653 GCCACACATTTTAAAAATCACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTT 1712 Query 1578 CTCGATTATAGTGGAC 1593 |||||||||||||||| Sbjct 1713 CTCGATTATAGTGGAC 1728 Score = 244 bits (132), Expect = 2e-63 Identities = 151/160 (94%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 698 GAGTGCATGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAATCTTGAATAGCCTTAA 757 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 716 GAGTGCCTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAA 775 Query 758 TTTAAACAATCACTGGATGAAAGAGTGTTTTTCTTGGCAATGCGGATCAAGAACTCAGAA 817 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 776 CTTAAACAATCACTGGATGAAAGAGT-TTTTTCTTGGCAATGCTTATCAAGAACTCAGAA 834 Query 818 TGCACATTGGGTCTTTGGCGAAGTACGAGTATTTGCAAGG 857 |||||| | |||||||||||||||||||||||||||||| Sbjct 835 TGCACACCGAGTCTTTGGCGAAGTACGAGTATTTGCAAGG 874 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85692330315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5