BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941591
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20380.1 | Symbols: PHT4;5 | phosphate transporter 4;5 | chr... 2652 0.0
> AT5G20380.1 | Symbols: PHT4;5 | phosphate transporter 4;5 | chr5:6887725-6892432
REVERSE LENGTH=1839
Length=1839
Score = 2652 bits (1436), Expect = 0.0
Identities = 1535/1584 (97%), Gaps = 2/1584 (0%)
Strand=Plus/Plus
Query 1 CTCCTCTCTCTGACACCAACAATGGCGAGACTTACCTTGAGACCCCACAATCACTTCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 CTCCTCTCTCTGACACCAACAATGGCGAGACTTACCTTGAGACCCCACAATCACTTCTTC 113
Query 61 TCCTCTCCTATCCACGCACATAAACAACCTTTCCTCTCCGTCTACACCATCTTCCCCCAC 120
|| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 114 TCATCTCCTATCTACGCACATAAACAACCTTTCCTCTCCGTATACACCATCTTCCCCCAC 173
Query 121 CATCACCACAATCCTCTTATCAAATCAAGGGTTAAGTGCTCCGCCAGTGGCACAGAACGA 180
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 174 CACCACCAAAATCCTCTTATCAAATCAAGGGTTAAGTGCTCCGCCAGTGGTACTGAACGA 233
Query 181 GTCAGAGAGAGCAAGAAGCTTCCTCCAAAGGATTCTATCGAAGACCCTAAACCCCAGCTT 240
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 234 GTCAGAGAGAGTAAGAAGCTTCCTCCAAAGGATCCTATCGAAGACCCTAAACCCCAGCTT 293
Query 241 CCGATTCCGGAAGTTCTCAGTACGGAAACAGGG-TTTGAACAGAATTGGCCTCCATGGAA 299
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 294 CCGATTCCTGAAGTTCTCAGTACGGAAAC-GGGTTTTGAACAGAATTGGCCTCCATGGAA 352
Query 300 AAATATACCTCAGAGATATAAGCTTATTGGCGCTACTTCTCTCGCCTTTGTTATCTGCAA 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 353 AAATATACCTCAGAGATATAAGCTTATCGGCGCTACTTCTCTCGCCTTTGTTATCTGCAA 412
Query 360 TATGGACAAGGTGAACTTGAGTATTGCTATAATACCAATGTCACACCAGTTTGGATGGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TATGGACAAGGTGAACTTGAGTATTGCTATAATACCAATGTCACACCAGTTTGGATGGAG 472
Query 420 CTCATCTGTGGCCGGGTTGGTCCAGTCATCCTTCTTTTGGGGTTATGCCTTGAGCCAGTT 479
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 473 CTCATCTGTGGCTGGGTTGGTCCAGTCTTCCTTCTTTTGGGGTTATGCCTTGAGCCAGTT 532
Query 480 GCCTGGAGGTTGGCTTTCCAAGATTTTTGGTGGAAGAAAAGTGCTTGAGATTGGTGTCTT 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 533 GCCTGGAGGTTGGCTTTCCAAGATTTTTGGCGGAAGAAAAGTGCTTGAGATTGGTGTCTT 592
Query 540 TACATGGTCTTTCGCTACAGCTCTTGTTCCACTACTTGCTGGATTTATGCCTGGTTTAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 593 TACATGGTCTTTCGCTACAGCTCTTGTTCCACTACTTGCTGGATTTATGCCCGGTTTGAT 652
Query 600 CTTTTCTCGAATTTTGGTGGGAATAGGAGAAGGTGTTTCTCCATCAGCTGCAACGGACCT 659
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 653 CTTTTCTCGAATTTTGGTGGGAATAGGAGAAGGTGTTTCCCCATCGGCTGCGACAGACCT 712
Query 660 TATTGCCAGGACAATACCTGTTAAAGAGCGCTCAAGGGCGGTAGGCTTTGTTTTTGGAGG 719
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 713 TATTGCCAGGACAATACCTGTTAAGGAGCGCTCAAGAGCGGTAGGCTTTGTTTTTGGAGG 772
Query 720 ATTGAGTTTGGGGAGTGTAATGGGGCTTCTCTTGGCTCCTCCCATTATCGAAACCTTTAA 779
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 773 ACTGAGTTTGGGGAGTGTAATGGGGCTTCTCTTGGCTCCTCCCATCATCGAAACCTTTAA 832
Query 780 TTGGGAATCTGTCTTTTACTTGTTTGGTCTCCTTGGTGTTGGCTGGTTCGTCGGGTTTCA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTGGGAATCTGTCTTTTACTTGTTTGGTCTCCTTGGTGTTGGCTGGTTCGTCGGGTTTCA 892
Query 840 GTTTCTTAATGAAGAAGAAGTTTCATATAAAGGTAATGAGATCTCTACTTCGCATAAATC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GTTTCTTAATGAAGAAGAAGTTTCATATAAAGGTAATGAGATCTCTACTTCGCATAAATC 952
Query 900 AGAAAACGCTACAAAGGAAGAGTTGGGGAGCTCATTGAAGGAGATTCCATGGAAGTCATT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AGAAAACGCTACAAAGGAAGAGTTGGGGAGCTCATTGAAGGAGATTCCATGGAAGTCATT 1012
Query 960 TTTCCAAAGCTCGGCTGTTTGGGCAATGATATACACTCACTTTTGTGGAAGCTGGGGTCA 1019
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1013 TTTCCAAAGCCCGGCTGTTTGGGCAATGATATACACTCACTTTTGTGGAAGTTGGGGTCA 1072
Query 1020 CTATACCTGTTTATCTTGGCTACCAACTTATTTCAGTGAGGCGCTTAATCTGAATTTGAC 1079
|||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||
Sbjct 1073 CTATACCTGTTTATCTTGGCTACCAACTTATTTCAGTGAGGCTCTGAGTCTAAATTTGAC 1132
Query 1080 AGAAGCTGCTTGGGTTTCCATCCTTCCTCCATTGGCTTCGATTGTCGTGACAAGTATTGC 1139
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1133 AGAAGCTGCTTGGGTTTCCATCCTTCCTCCACTGGCTTCGATTGTCGTGACAAGTCTTGC 1192
Query 1140 TTCACAATTTGCTGATTACTTAATTACAAATGGAGTTGAGACTACCACGGTCCGAAAGAT 1199
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1193 TTCACAATTTGCTGATTACTTAATTACAAATGGAGTTGATACTACCACGGTCCGAAAGAT 1252
Query 1200 TTGTCAAACGATTGCGTTTGTGTCCCCAGCGATCTGCATGACACTTTCATCTGTGGACAT 1259
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1253 TTGTCAAACGATTGCGTTTGTGGCACCAGCGATCTGCATGACACTTTCATCTGTGGACAT 1312
Query 1260 TGGATTGCCACCATGGGAAATTGTAGGAATCTTGACAGCAGGCTTGGCCCTATCAAGTTT 1319
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1313 TGGATTGCCACCATGGGAAATTGTAGGAATTTTGACAGCAGGCTTGGCCCTATCAAGTTT 1372
Query 1320 TGCTTTATCAGGACTTTATTGTACTCATCAGGACATCTCACCCGAATATGCAAGCATACT 1379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1373 TGCTTTATCAGGACTTTATTGTACTCATCAGGACATTTCACCCGAATATGCAAGCATACT 1432
Query 1380 CCTGGGTATTACCAACACAGTGGGGGCAGTACCTGGGATTGTAGGAGTGGCCCTAACTGG 1439
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1433 CCTGGGTATTACAAACACAGTCGGGGCAGTACCTGGAATTGTAGGAGTGGCCCTAACTGG 1492
Query 1440 TTTTCTCCTTGACTCAACCCATTCCTGGACTATGTCTCTATTCGTGCCATCGATATTCTT 1499
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1493 TTTTCTCCTAGACTCGACCCATTCCTGGACTATGTCTCTATTCGTGCCATCAATATTCTT 1552
Query 1500 CTACTTGACGGGGACAGTTGTATGGTTGGCATTTGCTAGCAGTGAGCCTCAGACGTTCAC 1559
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1553 CTACTTGACGGGGACGGTTGTATGGTTGGCATTTGCAAGCAGTGAGCCTCAGACGTTCAG 1612
Query 1560 TAAGGAAGACTCATAAGTTTTGTT 1583
|||||||||||||||||||||||
Sbjct 1613 AAAGGAAGACTCATAAGTTTTGTT 1636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5