BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941606
Length=493
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20550.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 433 9e-121
AT1G49390.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 313 1e-84
AT5G54000.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 278 4e-74
> AT5G20550.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:6952417-6953896
REVERSE LENGTH=1242
Length=1242
Score = 433 bits (234), Expect = 9e-121
Identities = 268/285 (94%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 7 AAGTCTTAAAAGCAATGGCTAGATCTTTGGAATTGGAAGAGAATTGTTTTCTAGACATGT 66
||||||| ||||| ||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 570 AAGTCTTTAAAGCGATGGCTATATCGTTGGAATTGGAAGAGAATTGCTTTCTAGACATGT 629
Query 67 ATGGAGAAAATGCTATGATGGATACAAGATTCAACATGTATCCTCCATGTCCGAAGCCGG 126
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 630 GTGGAGAAAATGCTACGATGGATACAAGATTCAACATGTATCCTCCATGTCCGAGGCCGG 689
Query 127 ACAAGGTTATCGGTGTTAAACCGCATGCTGATAAGTCGGCTTTCACTCTTCTCTTGCCCG 186
|||||||||| || |||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 690 ACAAGGTTATTGGCGTTAGACCGCACGCTGATAAGTCGGCTTTCACTCTTCTCTTGCCTG 749
Query 187 ACAAAAATGTCGAAGGGCTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTCCAATTG 246
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 750 ACAAAAATGTCGAAGGGCTTCAGTTCCTTAAAGATGGGAAGTGGTATAAAGCTCCAGTTG 809
Query 247 TCTCTGCAGATACAATTCTGATCAATGTTGGAGATCAGATGGAGA 291
|| || |||||||||||||||||||||||||||||||||||||||
Sbjct 810 TCGCTTCAGATACAATTCTGATCAATGTTGGAGATCAGATGGAGA 854
Score = 263 bits (142), Expect = 1e-69
Identities = 182/201 (91%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 291 AGAAAAAGAAAGGATATCTGTTGCAAC-TTTTTCATTCCAGGTGCAGACAAAGAGATTCA 349
||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 907 AGAAAAAGAAAGGATATCTGTGGCAACGTTTTGCATTCCAGGTGCAGACAAAGAGATTCA 966
Query 350 GCCTGT-GAATGGGCTTGTGTCCGAGGCAAGACCAAGATTGTATAAGCCTGTTAAGAACT 408
|||||| || |||||||||||| |||||||||||||||||||||||||| || || ||||
Sbjct 967 GCCTGTTGA-TGGGCTTGTGTCTGAGGCAAGACCAAGATTGTATAAGCCAGTAAAAAACT 1025
Query 409 ATGTGAAGCTCTTAAACAATTACTATCTACAGGGTTTAAGACCAATCGCAGCGTCGTTGA 468
||||| | ||||||||||| |||||| |||||||| ||||||||| |||||||| ||||
Sbjct 1026 ATGTGGACCTCTTAAACAAGTACTATATACAGGGTCAAAGACCAATTGCAGCGTCATTGA 1085
Query 469 TCTGATCACACTTTTCAAGTC 489
|||||||| | ||||||||||
Sbjct 1086 TCTGATCATATTTTTCAAGTC 1106
> AT1G49390.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:18279600-18280978
FORWARD LENGTH=1152
Length=1152
Score = 313 bits (169), Expect = 1e-84
Identities = 253/292 (87%), Gaps = 11/292 (4%)
Strand=Plus/Plus
Query 4 AGAAAGTCTTAAAAGCAATGGCTAGATCTTTGGAATTGGAAGAGAATTGTTTTCTAGACA 63
||||| |||| || || ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 527 AGAAATTCTTTAAGGCTATGGCTAGATCATTGGAATTGGAAGAGAATTGTTTTCTAGAAA 586
Query 64 TGTATGGAGAAAATGCTATGATGGATACAAGATTCAACATGTATCCTCCATGTCCGAAG- 122
||||||||||||||||| | ||| || ||||||||||| | | |||||||||||| |||
Sbjct 587 TGTATGGAGAAAATGCTGTAATGAATTCAAGATTCAACTTCTTTCCTCCATGTCC-AAGG 645
Query 123 CCGGACAAGGTTATCGGTG-TTAAACCGCATGCTGATAAGT-CGGCTTTCACTCTTCTCT 180
|| ||||||||||| || | ||||||||||||||||| || | ||| ||||||||||||
Sbjct 646 CCAGACAAGGTTATTGG-GATTAAACCGCATGCTGATG-GTTCAGCTATCACTCTTCTCT 703
Query 181 TGCCCGACAAAAATGTCGAAGGGCTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTC 240
| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 704 TACCCGACAAAGATGTCGAAGGGCTTCAGTTTCTTAAAGATGGGAAGTGGTATAAAGCTC 763
Query 241 CAATTGTCTCTGCAGATACAATTCTGATCAATGTT-GGAGATCAGATGGAGA 291
|||| || || | ||||||||||| |||| | || || ||||| |||||||
Sbjct 764 CAATAGT-TC--CTGATACAATTCTTATCACT-TTAGGTGATCAAATGGAGA 811
> AT5G54000.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:21917776-21919064
REVERSE LENGTH=1050
Length=1050
Score = 278 bits (150), Expect = 4e-74
Identities = 239/281 (85%), Gaps = 9/281 (3%)
Strand=Plus/Plus
Query 4 AGAAAGTCTTAAAAGCAATGGCTAGATCTTTGGAATTGGAAGAGAATTGTTTTCTAGACA 63
||||| |||| || ||| | |||||||| ||||| |||||||| ||||| |||||||| |
Sbjct 530 AGAAATTCTTCAAGGCATTAGCTAGATCGTTGGAGTTGGAAGATAATTGCTTTCTAGAGA 589
Query 64 TGTATGGAGAAAATGCTATGATGGATACAAGATTCAACATGTATCCTCCATGTCCGAAGC 123
|| |||| |||||||||| | |||| |||||||||||||| || ||||||||||||| ||
Sbjct 590 TGCATGGTGAAAATGCTACGTTGGAGACAAGATTCAACATCTACCCTCCATGTCCGAGGC 649
Query 124 CGGACAAGGTTATCGGTG-TTAAACCGCATGCTGATAAG-TC-GGCTTTCACTCTTCTCT 180
||||||||||| | || | | ||||||||| ||||| | || | |||| |||||| ||
Sbjct 650 CGGACAAGGTTCTTGG-GCTAAAACCGCATTCTGAT-GGCTCAGCCTTT-ACTCTTATCC 706
Query 181 TGCCCGACAAAAATGTCGAAGGGCTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTC 240
| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 707 TACCCGACAAAAATGTAGAAGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTT 766
Query 241 CAATTGTCTCTGCAGATACAATTCTGATCAATGTTGGAGAT 281
||||| || || || |||||||||||||||||| ||||||
Sbjct 767 CAATTCTCCCT-CA--TACAATTCTGATCAATGTAGGAGAT 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23509580796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5