BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941688

Length=837
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G21940.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  1190    0.0  


> AT5G21940.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G43850.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:7249268-7250539 REVERSE LENGTH=1159
Length=1159

 Score = 1190 bits (644),  Expect = 0.0
 Identities = 777/838 (93%), Gaps = 21/838 (3%)
 Strand=Plus/Plus

Query  1    TTCCAAGA-TTTTCTACTAGCGATGGATAGTGTTGAATCTTATGAGTTTAATATCTCCGG  59
            |||||||| ||||||| ||||||||||| |||||||||| | | |  ||  ||  |||||
Sbjct  165  TTCCAAGATTTTTCTAATAGCGATGGATTGTGTTGAATC-T-T-A--TT--TA--TCCGG  215

Query  60   CGATAATTCTGATGAATCTCCGGGGATGCGTAGTTGG---t-t-c-tctccgtccccgtc  113
             |||||||||||||||||||||| ||||| || ||||   | | | |||||||| |||||
Sbjct  216  AGATAATTCTGATGAATCTCCGGTGATGCATACTTGGTTTTCTCCGTCTCCGTCTCCGTC  275

Query  114  tgactcttcctcttctccttcttcttctgtttcttcttccATTGGGAGGAATAGCGACGA  173
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct  276  TGACTCTTCCTCTTCTCCTTCATCTTCTGCTTCTTCTTCCATTGGGAGGAATAGCGACGA  335

Query  174  TGGTGAGAAATCTTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTTGAGTCTCC  233
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  336  CGGTGAGAAATCGTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTTGAGTCTCC  395

Query  234  GTATAAAGGTCCTCTTGAAATGATGGAGTCTCTCGAACAAGTCTTACCTGTTAGGAAAGG  293
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  396  GTATAAAGGTCCTCTTGAAATGATGGAATCTCTCGAACAAGTCTTACCTGTTAGGAAAGG  455

Query  294  GATATCGAAGTATTACAATGGAAAGTCAAAGTCTTTTACTAATTTTGCGGCGGAGGCAGC  353
            ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||
Sbjct  456  GATATCGAAGTATTACAGTGGAAAGTCAAAGTCTTTTACTAATTTAACGGCGGAGGCAGC  515

Query  354  GTCGGCGTTGACTTCTTCTTCGTCGATGAAAGATTTAGCGAAGCCGGAGAATCCCTACAG  413
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  516  TTCGGCGTTGACTTCTTCTTCGTCGATGAAAGATTTAGCGAAGCCGGAGAATCCTTACAG  575

Query  414  TCGGAGGAGGAGGAATCTTCTCTGCCATCAGATTTGGGAGAATAACAAGACGACACCACG  473
            | |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct  576  TAGGAGGAGGAGGAATCTCCTCTGCCATCAGATTTGGGAAAATAACAAGACGACTCCACG  635

Query  474  TGGCGGGATCTCGAAGAAACACGTTATGAGTTCGAGTAGAAGTGCTTTGACGCTTGCTAT  533
            ||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||
Sbjct  636  TGGTGGGATCTCGAAGAAACACGTTATGAGTTCTAGCAGAAGCGCTTTGACGCTAGCTAT  695

Query  534  GGCGGTTGCGGCTGGTGTGATGACCGGAGAAGGATCTT-TATCAGGTGGTGACTCGTCGC  592
            ||| |||||||||||||||||||||||||||||||||| | || || |||||||||||||
Sbjct  696  GGCTGTTGCGGCTGGTGTGATGACCGGAGAAGGATCTTCT-TCCGGAGGTGACTCGTCGC  754

Query  593  GGGGATCAAGTCCGACGACATCTGGATCTCCACCGAGGCAGATACATCATCA--A-CATC  649
             |||||||||||||||||| ||||||||||| ||||||||| ||||||||||  | ||||
Sbjct  755  CGGGATCAAGTCCGACGACTTCTGGATCTCCTCCGAGGCAGCTACATCATCATCAACATC  814

Query  650  AGATGAAGAAGCTTCCTCCCTTGTATCCTAGGAGTCAAGGGTCTTTTGGTAATTTGACGT  709
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct  815  AGATGAAGAAGCTTCCTCCGTTGTATCCTAGGAGTCAAGGGTCTTTTGGTAATTTGACTT  874

Query  710  CGTCTCAGTCGTCGTTGGGTTTTTGTTCCTGGAGATCGCATTCTGTGGCGGATTTTCCGA  769
            |||||||||||||||||||||||||| |||||||||||  ||| ||||| ||||||||||
Sbjct  875  CGTCTCAGTCGTCGTTGGGTTTTTGTGCCTGGAGATCGTTTTCGGTGGCTGATTTTCCGA  934

Query  770  GGTGTTTTCCGGCGACGGCGAGTGGGATTGGGTTTAATGACTCGTAGGAAATGATGAT  827
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  935  GGTGTTTTCCGGCGACGGCGAGTGGGATTGGGTTTAATGACTCGTAGGAAATGATGAT  992



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40790127364


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5