BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941688 Length=837 Score E Sequences producing significant alignments: (Bits) Value AT5G21940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1190 0.0 > AT5G21940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7249268-7250539 REVERSE LENGTH=1159 Length=1159 Score = 1190 bits (644), Expect = 0.0 Identities = 777/838 (93%), Gaps = 21/838 (3%) Strand=Plus/Plus Query 1 TTCCAAGA-TTTTCTACTAGCGATGGATAGTGTTGAATCTTATGAGTTTAATATCTCCGG 59 |||||||| ||||||| ||||||||||| |||||||||| | | | || || ||||| Sbjct 165 TTCCAAGATTTTTCTAATAGCGATGGATTGTGTTGAATC-T-T-A--TT--TA--TCCGG 215 Query 60 CGATAATTCTGATGAATCTCCGGGGATGCGTAGTTGG---t-t-c-tctccgtccccgtc 113 |||||||||||||||||||||| ||||| || |||| | | | |||||||| ||||| Sbjct 216 AGATAATTCTGATGAATCTCCGGTGATGCATACTTGGTTTTCTCCGTCTCCGTCTCCGTC 275 Query 114 tgactcttcctcttctccttcttcttctgtttcttcttccATTGGGAGGAATAGCGACGA 173 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 276 TGACTCTTCCTCTTCTCCTTCATCTTCTGCTTCTTCTTCCATTGGGAGGAATAGCGACGA 335 Query 174 TGGTGAGAAATCTTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTTGAGTCTCC 233 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 336 CGGTGAGAAATCGTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTTGAGTCTCC 395 Query 234 GTATAAAGGTCCTCTTGAAATGATGGAGTCTCTCGAACAAGTCTTACCTGTTAGGAAAGG 293 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 396 GTATAAAGGTCCTCTTGAAATGATGGAATCTCTCGAACAAGTCTTACCTGTTAGGAAAGG 455 Query 294 GATATCGAAGTATTACAATGGAAAGTCAAAGTCTTTTACTAATTTTGCGGCGGAGGCAGC 353 ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 456 GATATCGAAGTATTACAGTGGAAAGTCAAAGTCTTTTACTAATTTAACGGCGGAGGCAGC 515 Query 354 GTCGGCGTTGACTTCTTCTTCGTCGATGAAAGATTTAGCGAAGCCGGAGAATCCCTACAG 413 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 516 TTCGGCGTTGACTTCTTCTTCGTCGATGAAAGATTTAGCGAAGCCGGAGAATCCTTACAG 575 Query 414 TCGGAGGAGGAGGAATCTTCTCTGCCATCAGATTTGGGAGAATAACAAGACGACACCACG 473 | |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct 576 TAGGAGGAGGAGGAATCTCCTCTGCCATCAGATTTGGGAAAATAACAAGACGACTCCACG 635 Query 474 TGGCGGGATCTCGAAGAAACACGTTATGAGTTCGAGTAGAAGTGCTTTGACGCTTGCTAT 533 ||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct 636 TGGTGGGATCTCGAAGAAACACGTTATGAGTTCTAGCAGAAGCGCTTTGACGCTAGCTAT 695 Query 534 GGCGGTTGCGGCTGGTGTGATGACCGGAGAAGGATCTT-TATCAGGTGGTGACTCGTCGC 592 ||| |||||||||||||||||||||||||||||||||| | || || ||||||||||||| Sbjct 696 GGCTGTTGCGGCTGGTGTGATGACCGGAGAAGGATCTTCT-TCCGGAGGTGACTCGTCGC 754 Query 593 GGGGATCAAGTCCGACGACATCTGGATCTCCACCGAGGCAGATACATCATCA--A-CATC 649 |||||||||||||||||| ||||||||||| ||||||||| |||||||||| | |||| Sbjct 755 CGGGATCAAGTCCGACGACTTCTGGATCTCCTCCGAGGCAGCTACATCATCATCAACATC 814 Query 650 AGATGAAGAAGCTTCCTCCCTTGTATCCTAGGAGTCAAGGGTCTTTTGGTAATTTGACGT 709 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 815 AGATGAAGAAGCTTCCTCCGTTGTATCCTAGGAGTCAAGGGTCTTTTGGTAATTTGACTT 874 Query 710 CGTCTCAGTCGTCGTTGGGTTTTTGTTCCTGGAGATCGCATTCTGTGGCGGATTTTCCGA 769 |||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||| Sbjct 875 CGTCTCAGTCGTCGTTGGGTTTTTGTGCCTGGAGATCGTTTTCGGTGGCTGATTTTCCGA 934 Query 770 GGTGTTTTCCGGCGACGGCGAGTGGGATTGGGTTTAATGACTCGTAGGAAATGATGAT 827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 935 GGTGTTTTCCGGCGACGGCGAGTGGGATTGGGTTTAATGACTCGTAGGAAATGATGAT 992 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40790127364 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5