BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941738
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22350.1 | Symbols: ELM1 | Protein of unknown function (DUF1... 2169 0.0
> AT5G22350.1 | Symbols: ELM1 | Protein of unknown function (DUF1022)
| chr5:7397386-7400937 REVERSE LENGTH=1851
Length=1851
Score = 2169 bits (1174), Expect = 0.0
Identities = 1277/1327 (96%), Gaps = 6/1327 (0%)
Strand=Plus/Plus
Query 3 AATCGA-AATCGAAACCGGCATGAGGCCAATCCTGTTGCCGGATCCACCCAGTTTATCCA 61
|||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 173 AATCGATAATC-TAACCGGCATGAGGCCAATCCTATTGCCGGATCCACCCAGTCTATCTA 231
Query 62 CCGGCGTACCTGATATTTTCGAACAAGGCGGTGCTCAGAACGTCGTCAGACGCGCCGTCG 121
||||||| |||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 232 CCGGCGTCCCTGATATTTTCGAACAAGGCGGTTCCCATAACGTCGTCAGACGCGCCGTCG 291
Query 122 TCATCGGAAACGGTTTCCCTGGCTCCGAGAATCAGTGTATCGGTCTCGTTCGTGCCCTCG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 292 TCATCGGAAACGGTTTCCCTGGCTCCGAGAATCAGTGTATCGGTCTCGTTCGTGCGCTCG 351
Query 182 GCTTAGCCGATAATCACCTACTCTACCGAGTGACCAGGCCTAAAGGAGGGA-TAAATGAG 240
||||| | ||||||||||| |||||||||||||| |||||||||||| ||| ||||||||
Sbjct 352 GCTTATCTGATAATCACCTTCTCTACCGAGTGACAAGGCCTAAAGGA-GGACTAAATGAG 410
Query 241 TGGCTGCACTGGCTTCCAGTTGGTTTTCACAAGAAGTTGGACTTTATCCTCAGGCATATT 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGGCTGCACTGGCTCCCAGTTGGTTTTCACAAGAAGTTGGACTTTATCCTCAGGCATATT 470
Query 301 TACCTCTACTCCAGATTGATGCTTGGATCCAAACAAAGTAAATACATCTCATCTGTACCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TACCTCTACTCCAGATTGATGCTTGGATCCAAACAAAGTAAATACATCTCATCTGTACCC 530
Query 361 TCAGAGAATGGTGCTAATGTAGGTTTGGCGTCTATTCTAGAGGCTGATGTGAAGAGCATT 420
||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 531 TCAGAGAATGGTGGTAATGTAGGTTTGGCCTCTATTCTAGAGGCTGATGTGAAGGGCATT 590
Query 421 GTGAATATGGCCCGTCAGACCTATGAAAAGGATGGCCCTTTGGTCGTGATTGCATGTGGA 480
|| ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 591 GTAAATTTGGCCCGTCAGACCTATGAAAAGGATGGCCCGTTGATCGTGATTGCATGTGGA 650
Query 481 AGAGATACAATTTCTATTGCTAGCTCGATAAGGCGTTTGGCTTCGGAAAACGTCTTCGTT 540
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 651 AGAGATACTATTTCTATTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTT 710
Query 541 GTTCAGATAAAACATCCTAGATCACATTTAAATAGGTTTGATATGGTGATCACGCCTCGT 600
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 711 GTTCAGATACAACATCCTAGATCACATTTAAATAGGTTTGACATGGTGATCACGCCTCGT 770
Query 601 CACGACTACTATCCTCTAACACTCGAAGCGCAAGAGCAGGTTCCTAGATTTATGCGTAGT 660
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 771 CACGACTACTATCCTCTAACACTCGAAGCGCAGGAGCAGGTCCCTAGATTTATGCGTAGT 830
Query 661 TGGATAACTCCACGTGAACCTCCTCAGGATCATGTAGTCTTGACTACTGGAGCTCTACAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGGATAACTCCACGTGAACCTCCTCAGGATCATGTAGTCTTGACTACTGGAGCTCTACAC 890
Query 721 CAGATCGATTATGCCTCACTCCGTAAAGCAGCTAGTGCCTGGCATGATGAATTTGCTGCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CAGATCGATTATGCCTCACTCCGTAAAGCAGCTAGTGCCTGGCATGATGAATTTGCTGCT 950
Query 781 CTTCCAAAGCCGTTAGTTGTGGTTAACATCGGCTGGCCTAGAAGTAACTGTCGGTATGGA 840
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CTTCCGAAGCCTTTAGTTGTGGTTAACATCGGCTGGCCTAGAAGTAACTGTCGGTATGGA 1010
Query 841 GCAGACCTAGCAAAGCAGCTAACAGACTCCCTTCTTAATGTCCTTGCTACCTGTGGAAGT 900
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GCAGACCTCGCAAAACAGCTAACAGACTCCCTTCTTAATGTCCTTGCTACCTGTGGAAGT 1070
Query 901 GTCAGAATTGCTCTTTCCTACAAAACCCCTGCAAAGGTTTCAAGAGTAATCTTCAAAGAA 960
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GTCAGAATTACTCTTTCCTACAAAACCCCTGCAAAGGTTTCAAGAGTAATCTTCAAAGAA 1130
Query 961 CTTGGAGATAACCCCAAAGTTTACATATGGAATGGCCAAGAACCAGATCCTTACATGGGA 1020
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1131 CTTGGAGATAACCCCAAAGTTTACATATGGAATGGCCAAGAACCAAATCCTTACATGGGG 1190
Query 1021 CATCTAGCTTGGGGTGATGCCTTTGTGGTAACAGCAGATTCTGTCGGTCTGATAAGCGAA 1080
|||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||
Sbjct 1191 CATCTAGCTTGGGGTGATGCTTTTGTGGTGACAGCAGATTCAGTCAGTCTGATAAGCGAA 1250
Query 1081 GCTTGTAGCACTGGGAAACCAGTGTATGTTGTTGGAGCCGATCACTGTAAATGGAAGATT 1140
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1251 GCTTGTAGCACCGGGAAACCAGTGTACGTTGTTGGAGCCGATCACTGTAAATGGAAGATT 1310
Query 1141 GCAGAATTCCAAAAATCTTTGAGGGAGCGAGGAGTCGTCCGCTCATTTACAGGTTTCGAA 1200
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1311 GCAGAATTCCAAAAGTCTTTGAGGGAGCGAGGAGTTGTCCGCTCATTTACAGGTTTCGAA 1370
Query 1201 GATATGTCGGAAAGTTGGAGTTATCCGCCATTGAGTGACACAGCAGAGGCAGCTACGAGA 1260
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1371 GATATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGACACAGCAGAGGCAGCTACGAGA 1430
Query 1261 ATACGGCGTGAATTGGCTGCACGTGGATGGAGTTTACGGTCTTGAAT-ACTATACTCTTC 1319
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1431 ATACGGCGTGAATTGGCTGCACGTGGATGGAGTTTACGGTCTTGAATTA-TATACTCTTC 1489
Query 1320 TTTGCTG 1326
|||||||
Sbjct 1490 TTTGCTG 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5