BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941820
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23020.1 | Symbols: MAM-L, MAM3, IMS2 | 2-isopropylmalate sy... 2390 0.0
AT5G23010.1 | Symbols: MAM1, IMS3 | methylthioalkylmalate synth... 1559 0.0
> AT5G23020.1 | Symbols: MAM-L, MAM3, IMS2 | 2-isopropylmalate
synthase 2 | chr5:7718121-7721839 FORWARD LENGTH=1799
Length=1799
Score = 2390 bits (1294), Expect = 0.0
Identities = 1471/1557 (94%), Gaps = 10/1557 (1%)
Strand=Plus/Plus
Query 1 TCTCCTACGTACTCTATAGTAATGGTTTCGTTTCTTCTCACATCTTCCAGTATGATAACC 60
|||||||| | |||||||||||||| |||||| ||||||||||| || ||||||||||||
Sbjct 62 TCTCCTACTTTCTCTATAGTAATGGCTTCGTTACTTCTCACATCGTCGAGTATGATAACC 121
Query 61 ACCA-CATGTCCCTCCATGGTTCTCCGGTCAGGGTTACCCATTGGATCTTCCCTTT-CCT 118
|| | | |||| |||||||||||||||||||||||||||||| ||||||| | ||| |||
Sbjct 122 ACTAGC-TGTCGCTCCATGGTTCTCCGGTCAGGGTTACCCATCGGATCTT-CTTTTCCCT 179
Query 119 CTCTTCGCCTGACCCGTCCATACAACAAGGCGACTTTGTTCACCTCATGTTACTCTTCTG 178
||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||| |||
Sbjct 180 CTCTTCGCCTGACCCGTCCATACGACAAGGCGACTCTGTTCGTCTCATGTTGCTCCGCTG 239
Query 179 AGTCCAAAAAGGTGGCAAGTAGTG---CTGATCTCAAACCTGCCGTGGAACGGAGGCCAG 235
|||||||||||||||||| ||||| |||||||||||||| | ||||||||||||| |
Sbjct 240 AGTCCAAAAAGGTGGCAACTAGTGCTACTGATCTCAAACCTATCATGGAACGGAGGCCGG 299
Query 236 AGTACATACCGAACAAGCTTCCTCACAAGAACTATGTTCGTGTATTAGACACGACGCTCC 295
||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 300 AGTACATTCCGAACAAGCTTCCCCACAAGAACTATGTGCGTGTATTAGACACGACGCTTC 359
Query 296 GTGATGGTGAACAATCTCCCGGTGCAGCACTTATC-CCACCGCAGAAGCTAGAGATTGCC 354
|||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 360 GTGACGGTGAACAATCTCCCGGTGCAGCACTTA-CTCCACCGCAGAAGTTAGAGATTGCC 418
Query 355 CGACAGCTTGCTAAACTCCGAGTTGACATCATGGAAGTTGGTTTTCCGGTGTCGTCTGAG 414
| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 419 AGGCAGCTAGCTAAACTCCGAGTAGACATCATGGAAGTTGGTTTTCCGGTGTCGTCTGAG 478
Query 415 GAAGAGTTCGAAGCCATTAAAACCATCGCCAAGACCGTGGGGAACGAGGTGGATGAGGAA 474
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAAGAATTCGAAGCTATTAAAACCATCGCCAAGACCGTGGGGAACGAGGTGGATGAGGAA 538
Query 475 ACAGGTTACGTCCCTGTGATATGCGGCATTGCCCGATGCAAAAATAGAGACATTGAGGCG 534
|| |||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 539 ACCGGTTACGTTCCTGTGATATGCGGCATTGCACGATGCAAAAAGAGAGACATCGAGGCA 598
Query 535 GCTTGGGAGGCACTGAAGTATGCGAAGAGGCCCAGGGTAATACTATTCACATCTACTAGT 594
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 599 ACTTGGGAGGCACTGAAGTATGCGAAGAGGCCGAGGGTAATGCTATTCACATCTACTAGT 658
Query 595 GACATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAAGTGATCGAGATGGCCGTG 654
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAAATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAAGTGATCGAGATGGCCGTG 718
Query 655 AACAGTGTTAAGTACGCTAAAAGCTTGGGCTTCAAAGACATCCAATTTGGGTGCGAAGAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AACAGTGTTAAGTACGCTAAAAGCTTGGGCTTCAAAGACATCCAATTTGGGTGCGAAGAT 778
Query 715 GGCGGCAGGACGGAGAAGGATTTTCTATGTAAGATTCTAGGAGAAACGATTAAAGCGGGT 774
||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||
Sbjct 779 GGCGGCAGGACGGAGAAAGATTTTATATGTAAGATTCTAGGAGAATCGATAAAAGCGGGT 838
Query 775 GCAACCACGGTGGGCTTTGCGGACACGGTCGGGATCAACATGCCGCCAGAATTCGGAGAA 834
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 GCAACCACGGTGGGGTTTGCGGACACGGTCGGGATCAACATGCCGCAAGAATTCGGAGAA 898
Query 835 CTCGTGGCCTATGTCAAAGAAAACACTCCTGGAGCTGATGATATTGTCGTCGCCATTCAT 894
|||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||
Sbjct 899 CTCGTGGCCTATGTCATAGAAAACACTCCAGGGGCTGATGATATTGTCTTCGCCATTCAT 958
Query 895 TGCCACAACGACCTTGGTGTTGCTACCGCCAACACAATATCCGGTATATGTGGGGGAGCA 954
|| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 TGTCATAACGACCTTGGTGTTGCTACCGCCAACACAATATCCGGTATATGTGCGGGAGCA 1018
Query 955 AGACAAGTAGAAGTAACGATCAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAA 1014
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGACAAGTCGAAGTGACGATCAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAA 1078
Query 1015 GAGGTCGTGATGGCTTTGAAATGTCGAGGAGAATATCTTATGGATGGTGTTTACACAAAA 1074
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1079 GAGGTCGTGATGGCTTTGAAATGTCGAGGAGAATCTCTGATGGATGGTGTTTACACAAAA 1138
Query 1075 ATAGACACACGCCAAATTATGGCTACAAGCAAGATGGTTCAAGAGCATACCGGCATGTAT 1134
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ATAGACTCACGCCAAATTATGGCTACAAGCAAGATGGTTCAAGAGCATACCGGCATGTAT 1198
Query 1135 GTTCAACCACATAAGCCAATAGTTGGAGACAACTGTTTTGTTCATGAGAGCGGCATTCAC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTTCAACCACATAAGCCAATAGTTGGAGACAACTGTTTTGTTCATGAGAGCGGCATTCAC 1258
Query 1195 CAGGATGGAATATTGAAAAATCGAAGTACATATGAGATTTTATCACCAGAAGATGTTGGG 1254
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1259 CAGGATGGAATATTGAAAAATCGAAGTACATATGAGATCTTATCACCAGAAGATGTTGGG 1318
Query 1255 ATCGTAAAATCTGAAAATTCTGGCATTGTTCTTGGAAAGCTTAGTGGACGTCATGCTGTA 1314
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1319 ATCGTAAAATCTGAAAATTCTGGCATTGTTCTTGGAAAGCTTAGCGGACGTCATGCTGTA 1378
Query 1315 AAAGACCGGCTTAAAGAGTTGGGATATGAAATCAGTGATGAGAAATTCAACGACATCTTC 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AAAGACCGGCTTAAAGAGTTGGGATATGAAATCAGTGATGAGAAATTCAACGACATCTTC 1438
Query 1375 TCACGATACAGAGAATTAACCAAGGAGAAAAAGAGAATCACGGACGATGATCTGAAAGCA 1434
|||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||| |||
Sbjct 1439 TCACGATACAGAGAATTAACGAAGGACAAAAAGAGAATCACAGACGCTGATCTGAAGGCA 1498
Query 1435 TTAGTGGTGAACGGTGATGAAATCTCATCAGATAAATTAAACAGTAAAGGAATCAACAAC 1494
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 1499 TTAGTGGTGAACGGTGCTGAAATCTCATCAGAAAAATTAAACAGTAAAGGAATTAACGAC 1558
Query 1495 CTTTTGTCAAGCCCTCAGATTTCCGCTGTTGTATAAGTTTGTAAAGACATTTGTGTA 1551
||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1559 CTTATGTCAAGCCCTCAGATTTCCGCTGTTGTATAAGTTTGGGAAGACATT-GTGTA 1614
> AT5G23010.1 | Symbols: MAM1, IMS3 | methylthioalkylmalate synthase
1 | chr5:7703092-7706896 FORWARD LENGTH=1729
Length=1729
Score = 1559 bits (844), Expect = 0.0
Identities = 1283/1494 (86%), Gaps = 33/1494 (2%)
Strand=Plus/Plus
Query 1 TCTCCTACGTACTCTATAGTAATGGTTTCGTTTCTTCTCACATCTTCCAG-TATGATAAC 59
|||||||||||||| ||||| |||| ||| | ||||| ||||||||| | |||||| |
Sbjct 61 TCTCCTACGTACTCCATAGTGATGGCTTCATCGCTTCTGACATCTTCC-GTTATGAT-CC 118
Query 60 C-ACCACATGTCCCTCCATGGTTCTCCGGTCAGGGTTACCCATTGGATCTTCCCTTTC-C 117
| ||||| || || || ||||| |||||||| ||||||| || |||||||| | | |
Sbjct 119 CTACCACCGGTTCCACCGTGGTTGGCCGGTCAGTGTTACCCTTTCAATCTTCCC-TGCAC 177
Query 118 TCTCTTCGCCTGACCCGTCCATACAACAA-GGCGACTTTGTTCACCTCATGTTACTCTTC 176
||||| |||||||||| | | ||||| || || | ||||||| |||||||| ||||||
Sbjct 178 TCTCTCCGCCTGACCCATTCGTACAAGAACCCCG-CATTGTTCATCTCATGTTGCTCTTC 236
Query 177 TGAGTCCAAAAAGGTGGCAAGTAG---TGCTGATCTCAAACCTGCCGTGGAACGGAGGCC 233
|| ||||||||| | ||||| ||| | ||||||||||||| | ||||||||| ||||
Sbjct 237 TGTGTCCAAAAATGCGGCAACTAGTTCTACTGATCTCAAACCCGTTGTGGAACGGTGGCC 296
Query 234 AGAGTACATACCGAACAAGCTTCCTC-ACAAG-AACTATGTTCGTGTATTAGACACGACG 291
||||||||||||||||||||||| | || | |||||||| |||||||| |||||||||
Sbjct 297 GGAGTACATACCGAACAAGCTTCC-CGAC-GGAAACTATGTGCGTGTATTCGACACGACG 354
Query 292 CTCCGTGATGGTGAACAATCTCCCGGTGCAGCACTTATC-CCACCGCAGAAGCTAGAGAT 350
|||||||| |||||||||||||| |||| | | || | | || |||||||||||||||||
Sbjct 355 CTCCGTGACGGTGAACAATCTCCTGGTGGATCCCTCA-CTCCGCCGCAGAAGCTAGAGAT 413
Query 351 TGCCCGACAGCTTGCTAAACTCCGAGTTGACATCATGGAAGTTGGTTTTCCGGTG-TCGT 409
|||||||||||| |||||||||||||| |||||||||||||| |||||||||| | || |
Sbjct 414 TGCCCGACAGCTCGCTAAACTCCGAGTAGACATCATGGAAGTCGGTTTTCCGG-GATCAT 472
Query 410 CTGAGGAAGAGTTCGAAGCCATTAAAACCATCGCCAAGACCGTGGGGAACGAGGTGGATG 469
|||| |||||||| ||| ||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 473 CTGAAGAAGAGTTAGAAACCATTAAGACCATCGCCAAGACTGTGGGGAATGAGGTGGATG 532
Query 470 AGGAAACAGGTTACGTCCCTGTGATATGCGGCATTGCCCGATGCAAAAATAGAGACATTG 529
|||||||||||||||||||||||||||||| ||| || ||||||||| ||||||||||||
Sbjct 533 AGGAAACAGGTTACGTCCCTGTGATATGCGCCATAGCTCGATGCAAACATAGAGACATTG 592
Query 530 AGGCGGCTTGGGAGGCACTGAAGTATGCGAAGAGGCCCAGGGTAATAC-TATTCACATCT 588
||||| |||||||||| |||||||| ||||||||||| ||| || | | |||||||||||
Sbjct 593 AGGCGACTTGGGAGGCGCTGAAGTACGCGAAGAGGCCAAGGATACT-CGTATTCACATCT 651
Query 589 ACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAAGTGATCGAGATG 648
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 652 ACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTCAAGAAGAAGTGATTGAGATG 711
Query 649 GCCGTGAACAGTGTTAAGTACGCTAAAAGCTTGGGCTTCAAAGACATCCAATTTGGGTGC 708
||||||| ||| ||| || |||||||||||||||||||| |||||||| |||||||||
Sbjct 712 GCCGTGAGTAGTATTAGGTTTGCTAAAAGCTTGGGCTTCAATGACATCCAGTTTGGGTGC 771
Query 709 GAAGATGGCGGCAGGACGGAGAAGGATTTTCTATGTAAGATTCTAGGAGAAACGATTAAA 768
||||||||||||||| |||| |||||||| ||||| ||||||||||||||| | || |||
Sbjct 772 GAAGATGGCGGCAGGTCGGACAAGGATTTCCTATGCAAGATTCTAGGAGAAGCCATAAAA 831
Query 769 GCGGGTGCAACCACGGTGGGCTTTGCG-GACACGGTCGGGATCAACATGCCGCCA-GAAT 826
|| |||| || |||| | | | | || ||||| |||||||||||||| | | ||||
Sbjct 832 GCCGGTGTTACGGTGGTGACCATCG-GTGATACGGTAGGGATCAACATGCCAC-ATGAAT 889
Query 827 TCGGAGAACTCGTGGCCTATGTCAAAGAAAACACTCCTGGAGCTGATGATATTGTCGTCG 886
||| ||||||||| | ||| |||||| |||||| |||||| ||| ||| |||||||||
Sbjct 890 ACGGGGAACTCGTGACTTATCTCAAAGCAAACACCCCTGGAATTGACGATGTTGTCGTCG 949
Query 887 CCATTCATTGCCACAACGACCTTGGTGTTGCTACCGCCAACACAATATCCGGTATATGTG 946
| ||||||| ||||||||||||||| |||| ||||||||| |||| |||||||| |||
Sbjct 950 CTGTTCATTGTCACAACGACCTTGGTCTTGCAACCGCCAACTCAATCGCCGGTATACGTG 1009
Query 947 GGGGAGCAAGACAAGTAGAAGTAACGATCAACGGAATTGGTGAAAGAAGTGGGAATGCGC 1006
|||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1010 CGGGAGCAAGACAGGTCGAAGTAACTATCAACGGAATTGGTGAAAGAAGTGGCAATGCGT 1069
Query 1007 CGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGAATATCTTATGGATGGTGTTT 1066
||||||| ||||||||||||||||||||||||||||| | |||| | || |||| ||||
Sbjct 1070 CGCTTGAGGAGGTCGTGATGGCTTTGAAATGTCGAGGGGCATATGTGATCAATGGGGTTT 1129
Query 1067 ACACAAAAATAGACACACGCCAAATTATGGCTACAAGCAAGATGGTTCAAGAGCATACCG 1126
||||||||||||||||||||||||| |||||||| |||||||||||||||||| | || |
Sbjct 1130 ACACAAAAATAGACACACGCCAAATCATGGCTACCAGCAAGATGGTTCAAGAGTACACGG 1189
Query 1127 GCATGTATGTTCAACCACATAAGCCAATAGTTGGAGAC-AACTGTTTTGTTCATGAGAGC 1185
|| ||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 1190 GCTTGTATGTTCAAGCACATAAGCCCATAGTTGGAG-CGAACTGTTTTGTTCATGAGAGC 1248
Query 1186 GGCATTCACCAGGATGGAATATTGAAAAATCGAAGTACATATGAGATTTTATCACCAGAA 1245
|||||||| ||||||||||||||||||||| | ||||| |||||||| ||||||||||||
Sbjct 1249 GGCATTCATCAGGATGGAATATTGAAAAATAGGAGTACTTATGAGATCTTATCACCAGAA 1308
Query 1246 GATGTTGGGATCGTAAAATCTGAAAATTCTGGCATTGTTCTTGGAAAGCTTAGTGGACGT 1305
||| ||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 1309 GATATTGGGATTGTAAAATCTCAAAATTCCGGCCTTGTTCTTGGAAAGCTTAGTGGACGT 1368
Query 1306 CATGCTGTAAAAGACCGGCTTAAAGAGTTGGGATATGAAATC-AGTGATGAGAAATTCAA 1364
|| ||||| ||||| ||||| |||||||||||||||||| || | |||||||||||| ||
Sbjct 1369 CACGCTGTGAAAGATCGGCTGAAAGAGTTGGGATATGAACTCGA-TGATGAGAAATTGAA 1427
Query 1365 CGACA-TCTTCTCACGATACAGAGAATTAACCAAGGAGAAAAAGAGAATCACGGACGATG 1423
|| | ||||||||| || |||||| ||||||||| | ||||||||||||||||| | ||
Sbjct 1428 CG-CTGTCTTCTCACTATTCAGAGATTTAACCAAGAATAAAAAGAGAATCACGGATGCTG 1486
Query 1424 ATCTGAAAGCATTAGTGGTGAACG-GTGATGAAATCTCATCAGATAAATTAAAC 1476
|| |||| |||||||| | | | ||||||||||| | || |||||||||
Sbjct 1487 ATTTGAAGGCATTAGTAAC-ATCTAGCGATGAAATCTCTTTGGAGAAATTAAAC 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5