BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941831
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23100.1 | Symbols: | Protein of unknown function, DUF617 |... 1232 0.0
> AT5G23100.1 | Symbols: | Protein of unknown function, DUF617
| chr5:7753434-7754759 FORWARD LENGTH=1326
Length=1326
Score = 1232 bits (667), Expect = 0.0
Identities = 791/847 (93%), Gaps = 23/847 (3%)
Strand=Plus/Plus
Query 45 GACTTTACCTCCAAGAGACACAATAGTTTCCACTGGACAAGAAAAGTCGGATCAGACGAA 104
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GACTTTGCCTCCAAGAGACACAATAGTTTCCACTGGACAAGAAAAGTCGGATCAGACGAA 192
Query 105 AACGACGACGTTTCTTCCCATAAACCTCTTCCTCATAAC-ACTAA-AC-ACA-cttcttc 160
||||||||||||||||| |||||||||||||||||| || || || || | | |||||||
Sbjct 193 AACGACGACGTTTCTTCTCATAAACCTCTTCCTCATCACAAC-AACACTAAACCTTCTTC 251
Query 161 ttcttcatcttcatcttcttctAATGTAATCACTCCCAAACGAAAGCTTCAATCTTTCGC 220
|||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 252 TTCTTCATCTTCATCTTCCTCTAATGTAATCACTCACAAAAAAAAGCTTCAATCTTTCGC 311
Query 221 CGTTTCTCGTCTCCGGTCAGTTATCGCTACTCTAAGCAGAGCACGACCCGGTAACCACAA 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 312 CGTTTCTCGTCTCCGGTCAGTTATCGCTACTCTAAGCAGAGCACGACCCGGTAACCAAAA 371
Query 281 CTCCGGACTCGGGTCACGGGTCGTGGGTACACTTTTCGGATCTCGTCGCGGTCACGTGCA 340
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 372 CTCCGGGCTCGGGTCACGGGTCGTGGGTACACTTTTCGGGTCTCGTCGTGGTCACGTGCA 431
Query 341 TTTCTCAATCCAGAAAGATCCTAATTCTCCACCGGCGTTTTTAATCGAACTCGCTACTCC 400
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TTTCTCTATCCAGAAAGATCCTAATTCTCCACCGGCGTTTTTAATCGAACTCGCTACTCC 491
Query 401 GATTAGTGGGTTAGTTAAAGAGATGGCTTCAGGACTCGTTAGAATCGCTTTGGAGTGTGA 460
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 492 GATTAGTGGGTTAGTCAAAGAAATGGCTTCAGGACTCGTTAGAATCGCTTTGGAGTGTGA 551
Query 461 TAAGGGTAAAGAGGAAGTAGAAGGAGATGaaaaaaaCGGAACTTTACGTCACGGCGGAGG 520
|||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 552 TAAGGGGAAAGAGGAAGAAGAAGGAGAAGAAAAAAACGGAACTTTACGTCACGGCGGAGG 611
Query 521 AGACAAGACGA---CG--G-CG--G-CGG---TTTCACGGCGGTTGGTGGAAGAGCCGAT 568
||||||||||| || | || | ||| ||||||||||||||||||| ||||||||
Sbjct 612 AGACAAGACGAAGACGACGACGACGGCGGCGGTTTCACGGCGGTTGGTGGAGGAGCCGAT 671
Query 569 GTGGAGGACTTATTGTAACGGGAAAAAGTGTGGATTTGCGACGAGGAGAGAGTGTGGTGA 628
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 672 GTGGAGAACTTATTGTAACGGGAAAAAGTGTGGATTTGCTACGAGGAGAGAGTGTGGTGA 731
Query 629 GAAGGAGAAAAAGGTTTTGAAAGCTCTTGAGATGGTTTCTATGGGCGCCGGAGTTTTACC 688
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 732 GAAGGAGAAAAAGGTTTTGAAAGCTCTTGAGATGGTTTCAATGGGCGCCGGAGTCTTACC 791
Query 689 GGAGACGGAGGAGACAGAcggcggcggcggcggcggAGGAGGAGATATAATGTATATGAG 748
||||||||||||| || ||| || |||||||||||||||| | |||||||||||||||
Sbjct 792 AGAGACGGAGGAGATAGGCGGTGGTGGCGGCGGCGGAGGAG-A--TATAATGTATATGAG 848
Query 749 GGCGAAATTTGAGAGGATTGTTGGGTCGCGTGATTCAGAAGCTTTCTATATGATGAATCC 808
||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 849 GGCGAAATTCGAGAGAATTGTTGGGTCGCGTGATTCAGAAGCCTTCTACATGATGAATCC 908
Query 809 TGATAGTAATGGAGCTCCTGAGCTTAGTATCTATCTACTCAGAATCTGAAGAA---GACG 865
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 909 TGATAGTAATGGAGCTCCTGAGCTTAGTATCTATCTACTCAGAATCTGATGAACAAGACG 968
Query 866 ATGATCG 872
|||||||
Sbjct 969 ATGATCG 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42799493244
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5