BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941899 Length=1139 Score E Sequences producing significant alignments: (Bits) Value AT5G23730.1 | Symbols: RUP2 | Transducin/WD40 repeat-like super... 1751 0.0 > AT5G23730.1 | Symbols: RUP2 | Transducin/WD40 repeat-like superfamily protein | chr5:8005234-8006630 FORWARD LENGTH=1397 Length=1397 Score = 1751 bits (948), Expect = 0.0 Identities = 1084/1149 (94%), Gaps = 11/1149 (1%) Strand=Plus/Plus Query 1 CAGTCATTACTCTGTTTTCATATGAACACTCTTCATCCTCACAAGCAGCAACAAGAACTA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 32 CAGTCATTACTCTGTTTTCATATGAACACTCTTCATCCTCACAAGCAGCAACAAGAACAA 91 Query 61 G---------AAGACCAAGCTAAACATGAATGGGATCTTtctctctccaccgtcgtctct 111 | |||| |||||| | | ||||||||||||||||||||||||||||| ||| Sbjct 92 GCACAACAACAAGAAGAAGCTAGATACGAATGGGATCTTTCTCTCTCCACCGTCGTATCT 151 Query 112 tcctcctcctcctccgcctccGACGTTATCGGAGCTATTGAATTCGATCCCACTGATAAC 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 TCCTCCTCCTCCTCCGCCTCCGACGTTATCGGAGCTATTGAATTCGATCCCACTGATAAC 211 Query 172 ATCGTCGCTACCGCTGGGATATCAAGAAAGATTCGTTTTTACGGCCTCCCTTCTCTTTTA 231 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 212 ATCGTCGCTACCGCCGGGATTTCAAGAAAGATTCGTTTTTACGGCCTCCCTTCTCTTTTA 271 Query 232 CGTACCAACGCCGTCTCCGGCACCGGAGTCTCCTTCGTCGATCAAGCCACCGCCTGCGAG 291 |||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 272 CGTAACAACGCTGTCTCCGGTACCGGAGTTTCCTTCGTCGATCAAGCCACCGCCTGCGAA 331 Query 292 TATTACATCTGTACGCCGGC-AAAGCTTAGTAGTCTCCGGTGGAGACCCGGGTCGGGCGG 350 |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 332 TATTACATCTGTACTCCGGCGAAA-CTTAGTAGTCTCCGGTGGAGACCCGGGTCGGGCGG 390 Query 351 TCGGGTCATCGGGTCGGGAGATTACGACGGCGTAGTGACCGAGTACGATCTAGAGAAGAG 410 |||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 391 TCGGGTTATTGGGTCGGGAGATTACGACGGCGTAGTGATGGAGTACGATCTTGAGAAGAG 450 Query 411 GACGCCGGTATTCGAGAGGGACGAGCACGGTGGCCGTCGCGTATGGAGCGTCGATTACAC 470 ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 451 GACGCCGGTATTCGAAAGGGACGAGCACGGTGGTCGTCGTGTATGGAGCGTAGATTACAC 510 Query 471 TCGCCACGGCGGTGCTTCCTTGGTGGGAGCGTCGGGATCGGACGACGGGACTATGCAAGT 530 ||| |||||||| ||||| |||||| |||||||||||||| ||||||||||||||||| Sbjct 511 TCGTCACGGCGGCGCTTCGACGGTGGGCGCGTCGGGATCGGATGACGGGACTATGCAAGT 570 Query 531 ATGGGATCCGAGGTGTCCGCCGGAGGAATCTGTCAGCGTTGTACGACCGTCGGGGATTTG 590 |||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||| Sbjct 571 ATGGGATCCGAGGTGTCCGCCGGAAGAATCTGTCGGTGTTGTACGACCGGCGGGGATTTG 630 Query 591 CCGGAGCGCTGTTTGTTGCGTCGAGTTTGATCCTTCCGGTGGACCAGCCGTGGCCGTCGG 650 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 631 CCGGAGTGCTGTTTGTTGCGTCGAGTTCGATCCTTCCGGTGGACCAGCCGTGGCCGTCGG 690 Query 651 ATGCGCTGATCGGAAAGGGTACGTGTACGATATAAGGAAACTCGTTGACCCGGCGTTGAC 710 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 691 ATGCGCTGATCGGAAAGGGTACGTTTACGATATAAGGAAACTCGTTGACCCGGCGTTGAC 750 Query 711 TTTACAAGGTCATACTAAAACGGTGTCGTATGTGAGGTTTCTCGACGGTGGTACGGTGGT 770 ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 751 TTTACAAGGTCATACGAAAACGGTGTCGTATGTGAGGTTCCTCGACGGTGGGACGGTGGT 810 Query 771 GACGGCAGGCACGGACGGTTGTTTGAAGTTGTGGAGCGTGGAGGACGGGCGCGTGATTCG 830 ||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 811 GACGGCAGGTACGGACGGTTGTTTGAAGCTGTGGAGCGTGGAGGATGGGCGCGTGATTCG 870 Query 831 CACGTACGAAGGGCACGTGAATAATCGAAACTTCGTGGGGTTATCTGTGTGGAGAAACGG 890 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 871 CACGTACGAAGGGCATGTGAATAATCGGAACTTCGTGGGGTTATCTGTGTGGAGAAACGG 930 Query 891 GGCGTTGTTTGGTTGCGGATCAGAAAACAACAGGGTGTTTGTGTACGATAGGAGATGGGG 950 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 931 CGCGTTGTTTGGTTGTGGATCGGAAAACAACAGGGTGTTTGTGTACGATAGGAGATGGGG 990 Query 951 GAAGCCGGTTTGGGTAGATGGGTTTGAACCGGTTGGTATGAATTCTGGTTCGGATAGGCG 1010 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 991 GAAGCCGGTTTGGGTAGATGGGTTTGAACCAGTTGGTATGAATTCTGGTTCGGATAAGCG 1050 Query 1011 GTTCGTGAGTAGCGTCTGTTGGAGGCAATCAGGTGTGGACCAGTGCACCTTAGTGGCTGG 1070 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1051 GTTCGTGAGTAGCGTCTGTTGGAGGCAATCAGGTGTGGACCAGTGTACCCTAGTGGCTGG 1110 Query 1071 AGGATCTGATGGAGTATTACAGGTTTACGTGGGCAAAAGAAAACCATAGTATTCTTCTTA 1130 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1111 AGGATCTGATGGAGTATTACAGGTTTACGTGGGCAAAAGAAAACCATAGTGTTCTTCTTA 1170 Query 1131 ATTTATCAT 1139 ||||||||| Sbjct 1171 ATTTATCAT 1179 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55873206585 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5